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Chunmei Liu

TitleAssociate Professor
Faculty RankAssociate Professor
InstitutionHoward University
DepartmentSystems and Computer Science
Address2300 Sixth Street, NW
2120B LKD Downing Hall
Washington DC 20059
Phone2028650056
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    Collapse Biography 
    Collapse awards and honors
    2008 - 2009Funding for Award in Excellent , Howard University
    2009 - 2013NSF CAREER Award, Howard University

    Collapse Overview 
    Collapse overview
    Dr. Chunmei Liu's research interests lie in the field of Computational Biology, Bioinformatics, and Algorithms. The primary thrust of her current research is in the development of computational algorithms for protein structure prediction, protein-protein interaction, and peptide sequencing from tandem mass spectral data. She is also interested designing efficient algorithms and the application of high performance computing techniques to solve other computational science problems. Dr. Liu has published many research articles on peer-reviewed journals and conferences. She is a recipient of multiple grants and awards including 2009 NSF CAREER Award. She is currently Associate Professor of the Department of Systems and Computer Science at Howard University.

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Li H, Liu C, Rwebangira MR, Burge L. Mono-isotope Prediction for Mass Spectra Using Bayes Network. Tsinghua Sci Technol. 2014 Dec 01; 19(6):617-623. PMID: 25620856.
      Citations:    
    2. Li H, Liu C. 3DProIN: Protein-Protein Interaction Networks and Structure Visualization. Am J Bioinform Comput Biol. 2014 Jun 14; 2(1):32-37. PMID: 25664223.
      Citations:    
    3. Liu C, Che D, Liu X, Song Y. Applications of machine learning in genomics and systems biology. Comput Math Methods Med. 2013; 2013:587492. PMID: 23476714.
      Citations: 7     Fields:    Translation:HumansAnimals
    4. Li H, Liu C. A dynamic data-driven framework for biological data using 2D barcodes. Comput Math Methods Med. 2012; 2012:892098. PMID: 23304237.
      Citations:    Fields:    Translation:HumansAnimals
    5. Li H, Liu C. Biomarker identification using text mining. Comput Math Methods Med. 2012; 2012:135780. PMID: 23197989.
      Citations: 3     Fields:    Translation:Humans
    6. Li H, Liu C, Burge L, Southerland W. Identification of two post-translational modifications via tandem mass spectrometry. Int J Comput Biol Drug Des. 2012; 5(3-4):314-24. PMID: 23013656.
      Citations:    Fields:    Translation:HumansCells
    7. Li H, Liu C. Peptide sequence tag generation for tandem mass spectra containing post-translational modifications. Int J Comput Biol Drug Des. 2012; 5(3-4):325-34. PMID: 23013657.
      Citations:    Fields:    Translation:HumansCells
    8. Liu C, Li H. In silico prediction of post-translational modifications. Methods Mol Biol. 2011; 760:325-40. PMID: 21780006.
      Citations: 3     Fields:    Translation:Cells
    9. Liu C, Burge L, Blake A. Algorithms and Time Complexity of the Request-Service Problem. J Comb Optim. 2010 Aug 01; 20(2):180-193. PMID: 21544235.
      Citations:    
    10. Liu C, Song Y. Parameterized Complexity and Inapproximability of Dominating Set Problem in Chordal and Near Chordal Graphs. J Comb Optim. 2010 Apr 15; 20(2):1-15. PMID: 23874144.
      Citations:    
    11. Chen P, Liu C, Burge L, Li J, Mohammad M, Southerland W, Gloster C, Wang B. DomSVR: domain boundary prediction with support vector regression from sequence information alone. Amino Acids. 2010 Aug; 39(3):713-26. PMID: 20165918.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    12. Chen P, Liu C, Burge L, Mahmood M, Southerland W, Gloster C. Prediction of inter-residue contact clusters from hydrophobic cores. Int J Data Min Bioinform. 2010; 4(6):722-34. PMID: 21355503.
      Citations:    Fields:    Translation:Cells
    13. Chen P, Liu C, Burge L, Mahmood M, Southerland W, Gloster C. Protein fold classification with genetic algorithms and feature selection. J Bioinform Comput Biol. 2009 Oct; 7(5):773-88. PMID: 19785045.
      Citations: 1     Fields:    Translation:Cells
    14. Chen P, Liu C, Burge L, Mahmood M, Southerland W, Gloster C. Prediction of inter-residue contact clusters from hydrophobic cores. Int J Data Min Bioinform. 2008 Dec 11; 2008:703-708. PMID: 20802820.
      Citations: 1     Fields:    
    15. Song Y, Liu C, Huang X, Malmberg RL, Xu Y, Cai L. Efficient parameterized algorithms for biopolymer structure-sequence alignment. IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec; 3(4):423-32. PMID: 17085850.
      Citations: 6     Fields:    Translation:Cells
    16. Liu C, Yan B, Song Y, Xu Y, Cai L. Peptide sequence tag-based blind identification of post-translational modifications with point process model. Bioinformatics. 2006 Jul 15; 22(14):e307-13. PMID: 16873487.
      Citations: 17     Fields:    Translation:Cells
    17. Liu C, Song Y, Yan B, Xu Y, Cai L. Fast de novo peptide sequencing and spectral alignment via tree decomposition. Pac Symp Biocomput. 2006; 255-66. PMID: 17094244.
      Citations: 2     Fields:    Translation:Cells
    18. Song Y, Liu C, Malmberg RL, He C, Cai L. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. Int J Bioinform Res Appl. 2006; 2(3):289-304. PMID: 18048167.
      Citations:    Fields:    Translation:Cells
    19. Liu C, Song Y, Hu P, Malmberg RL, Cai L. Efficient annotation of non-coding RNA structures including pseudoknots via automated filters. Comput Syst Bioinformatics Conf. 2006; 99-110. PMID: 17369629.
      Citations: 1     Fields:    Translation:Cells
    20. Song Y, Liu C, Malmberg R, Pan F, Cai L. Tree decomposition based fast search of RNA structures including pseudoknots in genomes. Proc IEEE Comput Syst Bioinform Conf. 2005; 223-34. PMID: 16447980.
      Citations: 7     Fields:    Translation:Cells
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