Below are the most recent publications written about "Software" by people in Profiles.
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Beruldsen F, de Freitas MV, Antunes DA. High resolution mapping of protein motions in time and space with RMSX and Flipbook. Sci Rep. 2026 Feb 20; 16(1).
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Li T, Cochran A, Xu Y, Charlton JR, Bennett KM, Timberline SM, Dailey RK, Jannath SY, Baldelomar EJ, Hoch MR, Wu T. AutoGlom: software tool for segmentation and analysis of magnetic resonance images of the kidney. Am J Physiol Renal Physiol. 2026 Jan 01; 330(1):F46-F59.
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Guardado M, Perez C, Campana S, Chavez Rojas B, Maga?a J, Jackson S, Samperio E, Hernandez S, Syas K, Hernandez RD, Zavala EI, Rohlfs RV. py_ped_sim: a flexible forward pedigree and genetic simulator for complex family pedigree analysis. BMC Bioinformatics. 2025 May 07; 26(1):122.
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Akhavan SR, Kelley ST. PyBootNet: a python package for bootstrapping and network construction. PeerJ. 2025; 13:e18915.
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Mu K, Fei Y, Xu Y, Zhang QC. RASP v2.0: an updated atlas for RNA structure probing data. Nucleic Acids Res. 2025 Jan 06; 53(D1):D211-D219.
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Hwang W, Austin SL, Blondel A, Boittier ED, Boresch S, Buck M, Buckner J, Caflisch A, Chang HT, Cheng X, Choi YK, Chu JW, Crowley MF, Cui Q, Damjanovic A, Deng Y, Devereux M, Ding X, Feig MF, Gao J, Glowacki DR, Gonzales JE, Hamaneh MB, Harder ED, Hayes RL, Huang J, Huang Y, Hudson PS, Im W, Islam SM, Jiang W, Jones MR, K?ser S, Kearns FL, Kern NR, Klauda JB, Lazaridis T, Lee J, Lemkul JA, Liu X, Luo Y, MacKerell AD, Major DT, Meuwly M, Nam K, Nilsson L, Ovchinnikov V, Paci E, Park S, Pastor RW, Pittman AR, Post CB, Prasad S, Pu J, Qi Y, Rathinavelan T, Roe DR, Roux B, Rowley CN, Shen J, Simmonett AC, Sodt AJ, T?pfer K, Upadhyay M, van der Vaart A, Vazquez-Salazar LI, Venable RM, Warrensford LC, Woodcock HL, Wu Y, Brooks CL, Brooks BR, Karplus M. CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed. J Phys Chem B. 2024 10 17; 128(41):9976-10042.
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Qin Y, Maggio A, Hawkins D, Beaudry L, Kim A, Pan D, Gong T, Fu Y, Yang H, Deng Y. Whole-genome bisulfite sequencing data analysis learning module on Google Cloud Platform. Brief Bioinform. 2024 Jul 23; 25(Supplement_1).
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Ferdous AHMI, Rani L, Islam MS, Noor KS, Roy S, Eid MMA, Rashed ANZ. Development and Enhancement of PCF-based Sensors for Terahertz-frequency Region Breast Cancer Cell Detection. Cell Biochem Biophys. 2024 Sep; 82(3):2837-2852.
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Ib??ez Alcal? RJ, Beck DW, Salcido AA, Davila LD, Giri A, Heaton CN, Villarreal Rodriguez K, Rakocevic LI, Hossain SB, Reyes NF, Batson SA, Macias AY, Drammis SM, Negishi K, Zhang Q, Umashankar Beck S, Vara P, Joshi A, Franco AJ, Hernandez Carbajal BJ, Ordonez MM, Ramirez FY, Lopez JD, Lozano N, Ramirez A, Legaspy L, Cruz PL, Armenta AA, Viel SN, Aguirre JI, Quintanar O, Medina F, Ordonez PM, Munoz AE, Mart?nez Gaudier GE, Naime GM, Powers RE, O'Dell LE, Moschak TM, Goosens KA, Friedman A. RECORD, a high-throughput, customizable system that unveils behavioral strategies leveraged by rodents during foraging-like decision-making. Commun Biol. 2024 07 06; 7(1):822.
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Stratton CA, Thompson Y, Zio K, Morrison WR, Murrell EG. uafR: An R package that automates mass spectrometry data processing. PLoS One. 2024; 19(7):e0306202.