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Sokratis Makrogiannis

Title
Faculty RankProfessor
InstitutionDelaware State University
DepartmentPhysics, Engineering, Mathematics and Computer Science
Address1200 N. DuPont Highway
Dover
Dover DE 19901-2202
Phone(302) 857-7058
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    SC3GM113754     (MAKROGIANNIS, SOKRATIS)Apr 2, 2015 - Jul 31, 2025
    NIH
    Image Analysis and Machine Learning Methods for Biomarkers of Age-related and Metabolic Diseases
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Annasamudram N, Zhao J, Prashanth A, Makrogiannis S. Scale Selection and Machine Learning-based Cell Segmentation and Tracking in Time Lapse Microscopy. Res Sq. 2024 Oct 30. PMID: 39574900.
      Citations:    
    2. Annasamudram NV, Okorie AM, Spencer RG, Kalyani RR, Yang Q, Landman BA, Ferrucci L, Makrogiannis S. Deep network and multi-atlas segmentation fusion for delineation of thigh muscle groups in three-dimensional water-fat separated MRI. J Med Imaging (Bellingham). 2024 Sep; 11(5):054003. PMID: 39234425.
      Citations:    
    3. Yue X, Stauff E, Boyapati S, Langhans SA, Xu W, Makrogiannis S, Okorie UJ, Okorie AM, Kandula VVR, Kecskemethy HH, Nikam RM, Averill LW, Shaffer TH. PET Imaging of Neurofibromatosis Type 1 with a Fluorine-18 Labeled Tryptophan Radiotracer. Pharmaceuticals (Basel). 2024 May 27; 17(6). PMID: 38931352.
      Citations:    
    4. Harris C, Okorie U, Makrogiannis S. Spatially localized sparse approximations of deep features for breast mass characterization. Math Biosci Eng. 2023 08 01; 20(9):15859-15882. PMID: 37919992.
      Citations:    Fields:    Translation:Humans
    5. Yang Q, Yu X, Lee HH, Cai LY, Xu K, Bao S, Huo Y, Moore AZ, Makrogiannis S, Ferrucci L, Landman BA. Single slice thigh CT muscle group segmentation with domain adaptation and self-training. J Med Imaging (Bellingham). 2023 Jul; 10(4):044001. PMID: 37448597.
      Citations:    
    6. Makrogiannis S. Editorial for "Diagnosis of Sarcopenia Using the L3 Skeletal Muscle Index Estimated from the L1 Skeletal Muscle Index on MR Images in Patients With Cirrhosis". J Magn Reson Imaging. 2023 11; 58(5):1579. PMID: 36951532.
      Citations:    Fields:    Translation:Humans
    7. Makrogiannis S, Okorie A, Di Iorio A, Bandinelli S, Ferrucci L. Multi-atlas segmentation and quantification of muscle, bone and subcutaneous adipose tissue in the lower leg using peripheral quantitative computed tomography. Front Physiol. 2022; 13:951368. PMID: 36311235.
      Citations:    
    8. Yang Q, Yu X, Lee HH, Tang Y, Bao S, Gravenstein KS, Moore AZ, Makrogiannis S, Ferrucci L, Landman BA. Label efficient segmentation of single slice thigh CT with two-stage pseudo labels. J Med Imaging (Bellingham). 2022 Sep; 9(5):052405. PMID: 35607409.
      Citations:    
    9. Yang Q, Yu X, Lee HH, Tang Y, Bao S, Gravenstein KS, Moore AZ, Makrogiannis S, Ferrucci L, Landman BA. Quantification of muscle, bones, and fat on single slice thigh CT. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar; 12032. PMID: 36303572.
      Citations:    
    10. Makrogiannis S, Zheng K, Harris C. Discriminative Localized Sparse Approximations for Mass Characterization in Mammograms. Front Oncol. 2021; 11:725320. PMID: 35036353.
      Citations:    
    11. Makrogiannis S. Editorial for "Cross-Cohort Automatic Knee MRI Segmentation with Multi-Planar U-Nets". J Magn Reson Imaging. 2022 06; 55(6):1664-1665. PMID: 34757652.
      Citations:    Fields:    Translation:Humans
    12. Zheng K, Harris C, Bakic P, Makrogiannis S. Spatially localized sparse representations for breast lesion characterization. Comput Biol Med. 2020 08; 123:103914. PMID: 32768050.
      Citations: 1     Fields:    Translation:Humans
    13. Zheng K, Harris CE, Jennane R, Makrogiannis S. Integrative blockwise sparse analysis for tissue characterization and classification. Artif Intell Med. 2020 07; 107:101885. PMID: 32828443.
      Citations: 3     Fields:    Translation:Humans
    14. Okorie A, Makrogiannis S. Region-based image registration for remote sensing imagery. Comput Vis Image Underst. 2019 Dec; 189. PMID: 37622168.
      Citations:    
    15. Boukari F, Makrogiannis S. Automated Cell Tracking Using Motion Prediction-Based Matching and Event Handling. IEEE/ACM Trans Comput Biol Bioinform. 2020 May-Jun; 17(3):959-971. PMID: 30334766.
      Citations: 3     Fields:    Translation:HumansCells
    16. Makrogiannis S, Boukari F, Ferrucci L. Automated skeletal tissue quantification in the lower leg using peripheral quantitative computed tomography. Physiol Meas. 2018 04 03; 39(3):035011. PMID: 29451497.
      Citations: 4     Fields:    Translation:Humans
    17. Fishbein KW, Makrogiannis SK, Lukas VA, Okine M, Ramachandran R, Ferrucci L, Egan JM, Chia CW, Spencer RG. Measurement of fat fraction in the human thymus by localized NMR and three-point Dixon MRI techniques. Magn Reson Imaging. 2018 07; 50:110-118. PMID: 29605590.
      Citations: 1     Fields:    Translation:Humans
    18. Orlov NV, Makrogiannis S, Ferrucci L, Goldberg IG. Differential Aging Signals in Abdominal CT Scans. Acad Radiol. 2017 12; 24(12):1535-1543. PMID: 28927581.
      Citations: 5     Fields:    Translation:Humans
    19. Boukari F, Makrogiannis S, Nossal R, Boukari H. Imaging and tracking HIV viruses in human cervical mucus. J Biomed Opt. 2016 09 01; 21(9):96001. PMID: 27598560.
      Citations: 2     Fields:    Translation:HumansCells
    20. Boukari F, Makrogiannis S. Joint level-set and spatio-temporal motion detection for cell segmentation. BMC Med Genomics. 2016 08 10; 9 Suppl 2:49. PMID: 27510743.
      Citations: 2     Fields:    Translation:HumansCells
    21. Makrogiannis S. Bone texture characterization for osteoporosis diagnosis using digital radiography. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1034-1037. PMID: 28268501.
      Citations: 6     Fields:    Translation:Humans
    22. Canepa M, AlGhatrif M, Pestelli G, Kankaria R, Makrogiannis S, Strait JB, Brunelli C, Lakatta EG, Ferrucci L. Impact of central obesity on the estimation of carotid-femoral pulse wave velocity. Am J Hypertens. 2014 Sep; 27(9):1209-17. PMID: 24637912.
      Citations: 14     Fields:    Translation:Humans
    23. Moore AZ, Caturegli G, Metter EJ, Makrogiannis S, Resnick SM, Harris TB, Ferrucci L. Difference in muscle quality over the adult life span and biological correlates in the Baltimore Longitudinal Study of Aging. J Am Geriatr Soc. 2014 Feb; 62(2):230-6. PMID: 24438020.
      Citations: 72     Fields:    Translation:Humans
    24. Makrogiannis S, Caturegli G, Davatzikos C, Ferrucci L. Computer-aided assessment of regional abdominal fat with food residue removal in CT. Acad Radiol. 2013 Nov; 20(11):1413-21. PMID: 24119354.
      Citations: 12     Fields:    Translation:Humans
    25. Rothman SM, Griffioen KJ, Fishbein KW, Spencer RG, Makrogiannis S, Cong WN, Martin B, Mattson MP. Metabolic abnormalities and hypoleptinemia in a-synuclein A53T mutant mice. Neurobiol Aging. 2014 May; 35(5):1153-61. PMID: 24239384.
      Citations: 11     Fields:    Translation:Animals
    26. Makrogiannis S, Serai S, Fishbein KW, Schreiber C, Ferrucci L, Spencer RG. Automated quantification of muscle and fat in the thigh from water-, fat-, and nonsuppressed MR images. J Magn Reson Imaging. 2012 May; 35(5):1152-61. PMID: 22170747.
      Citations: 15     Fields:    Translation:Humans
    27. Wu Y, Kotzer CJ, Makrogiannis S, Logan GA, Haley H, Barnette MS, Sarkar SK. A noninvasive [99mTc]DTPA SPECT/CT imaging methodology as a measure of lung permeability in a guinea pig model of COPD. Mol Imaging Biol. 2011 Oct; 13(5):923-9. PMID: 20838905.
      Citations: 4     Fields:    Translation:Animals
    28. Makrogiannis S, Ramachandran R, Fishbein KW, Kapogiannis D, Spencer RG, Chia CW. Towards segmentation of the thymus in fat and water parametric MR images. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:8078-81. PMID: 22256216.
      Citations:    Fields:    Translation:Humans
    29. Makrogiannis S, Bhotika R, Miller JV, Skinner J, Vass M. Nonparametric intensity priors for level set segmentation of low contrast structures. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):239-46. PMID: 20425993.
      Citations: 2     Fields:    Translation:Humans
    30. Makrogiannis S, Verma R, Davatzikos C. Anatomical equivalence class: a morphological analysis framework using a lossless shape descriptor. IEEE Trans Med Imaging. 2007 Apr; 26(4):619-31. PMID: 17427746.
      Citations: 6     Fields:    Translation:Humans
    31. Makrogiannis S, Economou G, Fotopoulos S. A region dissimilarity relation that combines feature-space and spatial information for color image segmentation. IEEE Trans Syst Man Cybern B Cybern. 2005 Feb; 35(1):44-53. PMID: 15719932.
      Citations: 2     Fields:    
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