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David Jeruzalmi

Faculty RankProfessor
InstitutionCity College, CUNY
DepartmentChemistry and Biochemistry
85 St. Nicholas Terrace
New York NY 10035
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Kraithong T, Hartley S, Jeruzalmi D, Pakotiprapha D. A Peek Inside the Machines of Bacterial Nucleotide Excision Repair. Int J Mol Sci. 2021 Jan 19; 22(2). PMID: 33477956.
      Citations:    Fields:    
    2. Kraithong T, Sucharitakul J, Buranachai C, Jeruzalmi D, Chaiyen P, Pakotiprapha D. Real-time investigation of the roles of ATP hydrolysis by UvrA and UvrB during DNA damage recognition in nucleotide excision repair. DNA Repair (Amst). 2021 Jan; 97:103024. PMID: 33302090.
      Citations:    Fields:    
    3. Homchan A, Sukted J, Mongkolsuk S, Jeruzalmi D, Matangkasombut O, Pakotiprapha D. Wss1 homolog from Candida albicans and its role in DNA-protein crosslink tolerance. Mol Microbiol. 2020 09; 114(3):409-422. PMID: 32302440.
      Citations: 1     Fields:    
    4. Case BC, Hartley S, Osuga M, Jeruzalmi D, Hingorani MM. The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair. Nucleic Acids Res. 2019 05 07; 47(8):4136-4152. PMID: 30892613.
      Citations: 2     Fields:    Translation:Cells
    5. Chase J, Catalano A, Noble AJ, Eng ET, Olinares PD, Molloy K, Pakotiprapha D, Samuels M, Chait B, des Georges A, Jeruzalmi D. Mechanisms of opening and closing of the bacterial replicative helicase. Elife. 2018 12 24; 7. PMID: 30582519.
      Citations: 4     Fields:    Translation:Cells
    6. Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B. Routine single particle CryoEM sample and grid characterization by tomography. Elife. 2018 05 29; 7. PMID: 29809143.
      Citations: 39     Fields:    Translation:AnimalsCells
    7. Orlova N, Gerding M, Ivashkiv O, Olinares PDB, Chait BT, Waldor MK, Jeruzalmi D. The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators. Nucleic Acids Res. 2017 04 20; 45(7):3724-3737. PMID: 28031373.
      Citations: 10     Fields:    Translation:Cells
    8. Kraithong T, Channgam K, Itsathitphaisarn O, Tiensuwan M, Jeruzalmi D, Pakotiprapha D. Movement of the ß-hairpin in the third zinc-binding module of UvrA is required for DNA damage recognition. DNA Repair (Amst). 2017 03; 51:60-69. PMID: 28209516.
      Citations: 1     Fields:    Translation:Cells
    9. Pakotiprapha D, Jeruzalmi D. Small-angle X-ray scattering reveals architecture and A2B2 stoichiometry of the UvrA-UvrB DNA damage sensor. Proteins. 2013 Jan; 81(1):132-9. PMID: 22933319.
      Citations: 5     Fields:    Translation:Cells
    10. Pakotiprapha D, Samuels M, Shen K, Hu JH, Jeruzalmi D. Structure and mechanism of the UvrA-UvrB DNA damage sensor. Nat Struct Mol Biol. 2012 Feb 05; 19(3):291-8. PMID: 22307053.
      Citations: 29     Fields:    Translation:Cells
    11. Muecke M, Samuels M, Davey M, Jeruzalmi D. Preparation of Multimilligram Quantities of Large, Linear DNA Molecules for Structural Studies. Structure. 2009 Dec 09; 17(12):1679. PMID: 28903019.
      Citations:    Fields:    
    12. Lu M, Yang J, Ren Z, Sabui S, Espejo A, Bedford MT, Jacobson RH, Jeruzalmi D, McMurray JS, Chen X. Crystal structure of the three tandem FF domains of the transcription elongation regulator CA150. J Mol Biol. 2009 Oct 23; 393(2):397-408. PMID: 19660470.
      Citations: 5     Fields:    Translation:HumansCells
    13. Samuels M, Gulati G, Shin JH, Opara R, McSweeney E, Sekedat M, Long S, Kelman Z, Jeruzalmi D. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic Acids Res. 2009 Jul; 37(13):4441-52. PMID: 19474351.
      Citations: 6     Fields:    Translation:Cells
    14. Jeruzalmi D. Enzymatic synthesis of multi-milligram quantities of large, linear DNA molecules for structural studies. Cold Spring Harb Protoc. 2009 Apr; 2009(4):pdb.prot5197. PMID: 20147140.
      Citations:    Fields:    
    15. Pakotiprapha D, Liu Y, Verdine GL, Jeruzalmi D. A structural model for the damage-sensing complex in bacterial nucleotide excision repair. J Biol Chem. 2009 May 08; 284(19):12837-44. PMID: 19287003.
      Citations: 25     Fields:    Translation:Cells
    16. Muecke M, Samuels M, Davey M, Jeruzalmi D. Preparation of multimilligram quantities of large, linear DNA molecules for structural studies. Structure. 2008 Jun; 16(6):837-41. PMID: 18547516.
      Citations: 4     Fields:    
    17. Pakotiprapha D, Inuzuka Y, Bowman BR, Moolenaar GF, Goosen N, Jeruzalmi D, Verdine GL. Crystal structure of Bacillus stearothermophilus UvrA provides insight into ATP-modulated dimerization, UvrB interaction, and DNA binding. Mol Cell. 2008 Jan 18; 29(1):122-33. PMID: 18158267.
      Citations: 40     Fields:    Translation:Cells
    18. Jeruzalmi D. First analysis of macromolecular crystals: biochemistry and x-ray diffraction. Methods Mol Biol. 2007; 364:43-62. PMID: 17172760.
      Citations: 2     Fields:    Translation:Cells
    19. O'Donnell M, Jeruzalmi D. Helical proteins initiate replication of DNA helices. Nat Struct Mol Biol. 2006 Aug; 13(8):665-7. PMID: 16886004.
      Citations: 5     Fields:    Translation:Cells
    20. Jeruzalmi D. The opened processivity clamp slides into view. Proc Natl Acad Sci U S A. 2005 Oct 18; 102(42):14939-40. PMID: 16217036.
      Citations:    Fields:    Translation:Cells
    21. Jeruzalmi D. Chromosomal DNA replication on a protein "chip". Structure. 2004 Dec; 12(12):2100-2. PMID: 15576024.
      Citations:    Fields:    Translation:Cells
    22. Davey MJ, Jeruzalmi D, Kuriyan J, O'Donnell M. Motors and switches: AAA+ machines within the replisome. Nat Rev Mol Cell Biol. 2002 Nov; 3(11):826-35. PMID: 12415300.
      Citations: 67     Fields:    Translation:HumansCells
    23. Jeruzalmi D, O'Donnell M, Kuriyan J. Clamp loaders and sliding clamps. Curr Opin Struct Biol. 2002 Apr; 12(2):217-24. PMID: 11959500.
      Citations: 59     Fields:    Translation:HumansCells
    24. Bruck I, Yuzhakov A, Yurieva O, Jeruzalmi D, Skangalis M, Kuriyan J, O'Donnell M. Analysis of a multicomponent thermostable DNA polymerase III replicase from an extreme thermophile. J Biol Chem. 2002 May 10; 277(19):17334-48. PMID: 11859073.
      Citations: 10     Fields:    Translation:AnimalsCells
    25. O'Donnell M, Jeruzalmi D, Kuriyan J. Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC. Curr Biol. 2001 Nov 13; 11(22):R935-46. PMID: 11719243.
      Citations: 24     Fields:    Translation:HumansAnimalsCells
    26. Jeruzalmi D, Yurieva O, Zhao Y, Young M, Stewart J, Hingorani M, O'Donnell M, Kuriyan J. Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell. 2001 Aug 24; 106(4):417-28. PMID: 11525728.
      Citations: 97     Fields:    Translation:Cells
    27. Jeruzalmi D, O'Donnell M, Kuriyan J. Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III. Cell. 2001 Aug 24; 106(4):429-41. PMID: 11525729.
      Citations: 123     Fields:    Translation:Cells
    28. Jeruzalmi D, Kuriyan J, Doudna J. Paul Sigler (1934-2000). Trends Biochem Sci. 2000 May; 25(5):221-2. PMID: 10782089.
      Citations:    Fields:    Translation:Cells
    29. Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J. Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage. J Mol Biol. 2000 Mar 10; 296(5):1215-23. PMID: 10698628.
      Citations: 68     Fields:    Translation:HumansAnimalsCells
    30. Zhao Y, Jeruzalmi D, Moarefi I, Leighton L, Lasken R, Kuriyan J. Crystal structure of an archaebacterial DNA polymerase. Structure. 1999 Oct 15; 7(10):1189-99. PMID: 10545321.
      Citations: 33     Fields:    Translation:HumansCells
    31. Cheetham GM, Jeruzalmi D, Steitz TA. Structural basis for initiation of transcription from an RNA polymerase-promoter complex. Nature. 1999 May 06; 399(6731):80-3. PMID: 10331394.
      Citations: 98     Fields:    Translation:Cells
    32. Jeruzalmi D, Steitz TA. Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme. EMBO J. 1998 Jul 15; 17(14):4101-13. PMID: 9670025.
      Citations: 49     Fields:    Translation:Cells
    33. Chen X, Vinkemeier U, Zhao Y, Jeruzalmi D, Darnell JE, Kuriyan J. Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA. Cell. 1998 May 29; 93(5):827-39. PMID: 9630226.
      Citations: 175     Fields:    Translation:HumansCells
    34. Cheetham GM, Jeruzalmi D, Steitz TA. Transcription regulation, initiation, and "DNA scrunching" by T7 RNA polymerase. Cold Spring Harb Symp Quant Biol. 1998; 63:263-7. PMID: 10384290.
      Citations: 10     Fields:    Translation:Cells
    35. Jeruzalmi D, Steitz TA. Use of organic cosmotropic solutes to crystallize flexible proteins: application to T7 RNA polymerase and its complex with the inhibitor T7 lysozyme. J Mol Biol. 1997 Dec 19; 274(5):748-56. PMID: 9405156.
      Citations: 10     Fields:    Translation:Cells
    36. Abdel-Meguid SS, Jeruzalmi D, Sanderson MR. Preliminary characterization of crystals. Methods Mol Biol. 1996; 56:55-86. PMID: 8781242.
      Citations: 1     Fields:    Translation:Cells
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