Qing Li to Polyadenylation
This is a "connection" page, showing publications Qing Li has written about Polyadenylation.
Connection Strength
12.526
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Ma H, Lin J, Mei F, Mao H, Li QQ. Differential alternative polyadenylation of homoeologous genes of allohexaploid wheat ABD subgenomes during drought stress response. Plant J. 2023 05; 114(3):499-518.
Score: 0.835
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Lin J, Li QQ. Coupling epigenetics and RNA polyadenylation: missing links. Trends Plant Sci. 2023 02; 28(2):223-234.
Score: 0.811
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Lin J, Ye C, Li QQ. QPAT-seq, a rapid and deduplicatable method for quantification of poly(A) site usages. Methods Enzymol. 2021; 655:73-83.
Score: 0.741
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Lin J, Hung FY, Ye C, Hong L, Shih YH, Wu K, Li QQ. HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis. Genome Res. 2020 10; 30(10):1407-1417.
Score: 0.699
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Ye C, Zhou Q, Wu X, Yu C, Ji G, Saban DR, Li QQ. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinformatics. 2020 02 15; 36(4):1262-1264.
Score: 0.676
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Yu Z, Lin J, Li QQ. Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation. Plant Cell. 2019 10; 31(10):2332-2352.
Score: 0.654
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Ye C, Zhou Q, Wu X, Ji G, Li QQ. Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice. Ecotoxicol Environ Saf. 2019 Nov 15; 183:109485.
Score: 0.651
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Ye C, Zhou Q, Hong Y, Li QQ. Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution. RNA Biol. 2019 06; 16(6):785-797.
Score: 0.634
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Zhao Z, Wu X, Ji G, Liang C, Li QQ. Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal. Int J Mol Sci. 2019 Feb 22; 20(4).
Score: 0.632
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Zhou Q, Fu H, Yang D, Ye C, Zhu S, Lin J, Ye W, Ji G, Ye X, Wu X, Li QQ. Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica. Plant J. 2019 04; 98(2):260-276.
Score: 0.631
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Hong L, Ye C, Lin J, Fu H, Wu X, Li QQ. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J. 2018 01; 93(2):246-258.
Score: 0.582
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Xing D, Li QQ. RADPRE: a computational program for identification of differential mRNA processing including alternative polyadenylation. Methods Mol Biol. 2015; 1255:57-66.
Score: 0.474
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Zhao H, Li QQ. In vitro analysis of cleavage and polyadenylation in Arabidopsis. Methods Mol Biol. 2015; 1255:79-89.
Score: 0.474
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Hunt AG, Li QQ. Preface. Polyadenylation in plants. Methods Mol Biol. 2015; 1255:v-vi.
Score: 0.474
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Hunt AG, Xing D, Li QQ. Plant polyadenylation factors: conservation and variety in the polyadenylation complex in plants. BMC Genomics. 2012 Nov 20; 13:641.
Score: 0.410
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Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res. 2011 Sep; 21(9):1478-86.
Score: 0.374
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Xing D, Li QQ. Alternative polyadenylation and gene expression regulation in plants. Wiley Interdiscip Rev RNA. 2011 May-Jun; 2(3):445-58.
Score: 0.356
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Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. BMC Genomics. 2008 May 14; 9:220.
Score: 0.299
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Hao S, Zhang L, Zhao D, Zhou J, Ye C, Qu H, Li QQ. Inhibitor AN3661 reveals biological functions of Arabidopsis CLEAVAGE and POLYADENYLATION SPECIFICITY FACTOR 73. Plant Physiol. 2023 08 31; 193(1):537-554.
Score: 0.216
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Ye C, Long Y, Ji G, Li QQ, Wu X. APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinformatics. 2018 06 01; 34(11):1841-1849.
Score: 0.150
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Lin J, Xu R, Wu X, Shen Y, Li QQ. Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination. Plant J. 2017 Sep; 91(5):829-839.
Score: 0.142
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Li QQ, Liu Z, Lu W, Liu M. Interplay between Alternative Splicing and Alternative Polyadenylation Defines the Expression Outcome of the Plant Unique OXIDATIVE TOLERANT-6 Gene. Sci Rep. 2017 05 17; 7(1):2052.
Score: 0.140
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Fu H, Yang D, Su W, Ma L, Shen Y, Ji G, Ye X, Wu X, Li QQ. Genome-wide dynamics of alternative polyadenylation in rice. Genome Res. 2016 12; 26(12):1753-1760.
Score: 0.134
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Ji G, Li L, Li QQ, Wu X, Fu J, Chen G, Wu X. PASPA: a web server for mRNA poly(A) site predictions in plants and algae. Bioinformatics. 2015 May 15; 31(10):1671-3.
Score: 0.119
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Wu X, Ji G, Li QQ. Computational analysis of plant polyadenylation signals. Methods Mol Biol. 2015; 1255:3-11.
Score: 0.119
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Wu X, Ji G, Li QQ. Prediction of plant mRNA polyadenylation sites. Methods Mol Biol. 2015; 1255:13-23.
Score: 0.119
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Zhao H, Ye X, Li QQ. Characterization of plant polyadenylation complexes by using tandem affinity purification. Methods Mol Biol. 2015; 1255:69-78.
Score: 0.119
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Liu M, Wu X, Li QQ. DNA/RNA hybrid primer mediated poly(A) tag library construction for Illumina sequencing. Methods Mol Biol. 2015; 1255:175-84.
Score: 0.119
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Cao J, Li QQ. Poly(A) tag library construction from 10 ng total RNA. Methods Mol Biol. 2015; 1255:185-94.
Score: 0.119
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Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C. Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms. G3 (Bethesda). 2014 Mar 13; 4(5):871-83.
Score: 0.112
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Ma L, Pati PK, Liu M, Li QQ, Hunt AG. High throughput characterizations of poly(A) site choice in plants. Methods. 2014 May 01; 67(1):74-83.
Score: 0.107
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Zhao H, Zheng J, Li QQ. A novel plant in vitro assay system for pre-mRNA cleavage during 3'-end formation. Plant Physiol. 2011 Nov; 157(3):1546-54.
Score: 0.094
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Xing D, Zhao H, Li QQ. Arabidopsis CLP1-SIMILAR PROTEIN3, an ortholog of human polyadenylation factor CLP1, functions in gametophyte, embryo, and postembryonic development. Plant Physiol. 2008 Dec; 148(4):2059-69.
Score: 0.077
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Ye C, Zhao D, Ye W, Wu X, Ji G, Li QQ, Lin J. QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Brief Bioinform. 2021 11 05; 22(6).
Score: 0.048
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You LY, Lin J, Xu HW, Chen CX, Chen JY, Zhang J, Zhang J, Li YX, Ye C, Zhang H, Jiang J, Zhu JK, Li QQ, Duan CG. Intragenic heterochromatin-mediated alternative polyadenylation modulates miRNA and pollen development in rice. New Phytol. 2021 10; 232(2):835-852.
Score: 0.047
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Zhang YZ, Lin J, Ren Z, Chen CX, Miki D, Xie SS, Zhang J, Chang YN, Jiang J, Yan J, Li QQ, Zhu JK, Duan CG. Genome-wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis. J Integr Plant Biol. 2021 Apr; 63(4):707-722.
Score: 0.045
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Fu H, Wang P, Wu X, Zhou X, Ji G, Shen Y, Gao Y, Li QQ, Liang J. Distinct genome-wide alternative polyadenylation during the response to silicon availability in the marine diatom Thalassiosira pseudonana. Plant J. 2019 07; 99(1):67-80.
Score: 0.040
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Dong M, Ji G, Li QQ, Liang C. Extraction of poly(A) sites from large-scale RNA-Seq data. Methods Mol Biol. 2015; 1255:25-37.
Score: 0.030
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Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A. 2011 Jul 26; 108(30):12533-8.
Score: 0.023