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Hung-Chung Huang

TitleAssistant Professor in Bioinformatics and Computational Biology/Biochemistry
Faculty RankAssistant Professor
InstitutionJackson State University
DepartmentBiology
Address1400 John R. Lynch St.
P.O. Box 18540
Dept. of Biology, JSU
Jackson MS 39217
Phone6017900153
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    Research Interests:
    1. Bioinformatics and Computational Biology/Biochemistry.
    2. Next Generation Sequencing Data Analysis; Microarray Data Analysis.
    3. Genome-wide SNP and eQTL Analyses to Identify Causative Disease-causing Genetic Allele.
    4. Identification of Biomarkers for Disease Diagnosis and Prognosis.
    5. Bio-molecular Molecular Dynamics Simulations and Drug Design.
    6. Biological Big Data Research.


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Komolafe K, Olaleye MT, Huang HC, Pacurari M. Contemporary Insights into the Biological Mechanisms of Parkia biglobosa. Int J Environ Res Public Health. 2024 Mar 24; 21(4). PMID: 38673307.
      Citations:    Fields:    Translation:HumansAnimals
    2. Wei X, Hu H, Zheng B, Arslan Z, Huang HC, Mao W, Liu YM. Profiling metals in Cordyceps sinensis by using inductively coupled plasma mass spectrometry. Anal Methods. 2017 Jan 28; 9(4):724-728. PMID: 28217148.
      Citations: 4     Fields:    
    3. Hollman AL, Tchounwou PB, Huang HC. The Association between Gene-Environment Interactions and Diseases Involving the Human GST Superfamily with SNP Variants. Int J Environ Res Public Health. 2016 Mar 29; 13(4):379. PMID: 27043589.
      Citations: 34     Fields:    Translation:Humans
    4. Wang GZ, Hickey SL, Shi L, Huang HC, Nakashe P, Koike N, Tu BP, Takahashi JS, Konopka G. Cycling Transcriptional Networks Optimize Energy Utilization on a Genome Scale. Cell Rep. 2015 Dec 01; 13(9):1868-80. PMID: 26655902.
      Citations: 30     Fields:    Translation:AnimalsCells
    5. Araujo DJ, Anderson AG, Berto S, Runnels W, Harper M, Ammanuel S, Rieger MA, Huang HC, Rajkovich K, Loerwald KW, Dekker JD, Tucker HO, Dougherty JD, Gibson JR, Konopka G. FoxP1 orchestration of ASD-relevant signaling pathways in the striatum. Genes Dev. 2015 Oct 15; 29(20):2081-96. PMID: 26494785.
      Citations: 56     Fields:    Translation:HumansAnimalsCells
    6. Takahashi JS, Kumar V, Nakashe P, Koike N, Huang HC, Green CB, Kim TK. ChIP-seq and RNA-seq methods to study circadian control of transcription in mammals. Methods Enzymol. 2015; 551:285-321. PMID: 25662462.
      Citations: 18     Fields:    Translation:HumansAnimalsCells
    7. Kumar V, Kim K, Joseph C, Kourrich S, Yoo SH, Huang HC, Vitaterna MH, de Villena FP, Churchill G, Bonci A, Takahashi JS. C57BL/6N mutation in cytoplasmic FMRP interacting protein 2 regulates cocaine response. Science. 2013 Dec 20; 342(6165):1508-12. PMID: 24357318.
      Citations: 111     Fields:    Translation:Animals
    8. Bridenbaugh EA, Wang W, Srimushnam M, Cromer WE, Zawieja SD, Schmidt SE, Jupiter DC, Huang HC, Van Buren V, Zawieja DC. An immunological fingerprint differentiates muscular lymphatics from arteries and veins. Lymphat Res Biol. 2013 Sep; 11(3):155-71. PMID: 24044756.
      Citations: 13     Fields:    Translation:AnimalsCells
    9. Koike N, Yoo SH, Huang HC, Kumar V, Lee C, Kim TK, Takahashi JS. Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science. 2012 Oct 19; 338(6105):349-54. PMID: 22936566.
      Citations: 741     Fields:    Translation:AnimalsCells
    10. Zhao Q, Huang HC, Nagaswamy U, Xia Y, Gao X, Fox GE. UNAC tetraloops: to what extent do they mimic GNRA tetraloops? Biopolymers. 2012 Aug; 97(8):617-28. PMID: 22605553.
      Citations: 8     Fields:    Translation:Cells
    11. Huang HC, Zheng S, VanBuren V, Zhao Z. Discovering disease-specific biomarker genes for cancer diagnosis and prognosis. Technol Cancer Res Treat. 2010 Jun; 9(3):219-30. PMID: 20441232.
      Citations: 21     Fields:    Translation:Humans
    12. Huang HC, Jupiter D, VanBuren V. Classification of genes and putative biomarker identification using distribution metrics on expression profiles. PLoS One. 2010 Feb 04; 5(2):e9056. PMID: 20140228.
      Citations: 2     Fields:    Translation:Animals
    13. Huang HC, Jupiter D, Qiu M, Briggs JM, Vanburen V. Cluster analysis of hydration waters around the active sites of bacterial alanine racemase using a 2-ns MD simulation. Biopolymers. 2008 Mar; 89(3):210-9. PMID: 18023020.
      Citations:    Fields:    Translation:Cells
    14. Li W, Peng Y, Huang HC, Liu Y. Biomarker discovery and visualization in gene expression data with efficient generalized matrix approximations. J Bioinform Comput Biol. 2007 Apr; 5(2a):251-79. PMID: 17589961.
      Citations:    Fields:    Translation:Humans
    15. Li W, Liu Y, Huang HC, Peng Y, Lin Y, Ng WK, Ong KL. Dynamical systems for discovering protein complexes and functional modules from biological networks. IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun; 4(2):233-50. PMID: 17473317.
      Citations: 7     Fields:    Translation:Cells
    16. Zheng X, Huang HC, Li W, Liu P, Li QZ, Liu Y. Modeling nonlinearity in dilution design microarray data. Bioinformatics. 2007 Jun 01; 23(11):1339-47. PMID: 17237040.
      Citations: 1     Fields:    
    17. Li W, Peng Y, Huang HC, Liu Y. Efficient generalized matrix approximations for biomarker discovery and visualization in gene expression data. Comput Syst Bioinformatics Conf. 2006; 133-44. PMID: 17369632.
      Citations: 1     Fields:    Translation:HumansCells
    18. Zhao Q, Nagaswamy U, Lee H, Xia Y, Huang HC, Gao X, Fox GE. NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit. Nucleic Acids Res. 2005; 33(10):3145-53. PMID: 15939932.
      Citations: 1     Fields:    Translation:Cells
    19. Huang HC, Nagaswamy U, Fox GE. The application of cluster analysis in the intercomparison of loop structures in RNA. RNA. 2005 Apr; 11(4):412-23. PMID: 15769871.
      Citations: 24     Fields:    Translation:Cells
    20. Huang HC, Briggs JM. The association between a negatively charged ligand and the electronegative binding pocket of its receptor. Biopolymers. 2002 Apr 05; 63(4):247-60. PMID: 11807752.
      Citations: 5     Fields:    Translation:Cells
    21. Strych U, Huang HC, Krause KL, Benedik MJ. Characterization of the alanine racemases from Pseudomonas aeruginosa PAO1. Curr Microbiol. 2000 Oct; 41(4):290-4. PMID: 10977898.
      Citations: 20     Fields:    Translation:Cells
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