Jerzy Leszczynski to DNA
This is a "connection" page, showing publications Jerzy Leszczynski has written about DNA.
Connection Strength
6.489
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Gorb L, Pekh A, Nyporko A, Ilchenko M, Golius A, Zubatiuk T, Zubatyuk R, Dubey I, Hovorun DM, Leszczynski J. Effect of Microenvironment on the Geometrical Structure of d(A)5 d(T)5 and d(G)5 d(C)5 DNA Mini-Helixes and the Dickerson Dodecamer: A Density Functional Theory Study. J Phys Chem B. 2020 10 22; 124(42):9343-9353.
Score: 0.619
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Gu J, Wang J, Leszczynski J. Electron interaction with a DNA duplex: dCpdC:dGpdG. Phys Chem Chem Phys. 2016 05 21; 18(19):13657-65.
Score: 0.455
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Zubatiuk T, Kukuev MA, Korolyova AS, Gorb L, Nyporko A, Hovorun D, Leszczynski J. Structure and Binding Energy of Double-Stranded A-DNA Mini-helices: Quantum-Chemical Study. J Phys Chem B. 2015 Oct 08; 119(40):12741-9.
Score: 0.436
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Zubatiuk T, Shishkin O, Gorb L, Hovorun D, Leszczynski J. Structural waters in the minor and major grooves of DNA--a major factor governing structural adjustments of the A-T mini-helix. J Phys Chem B. 2015 Jan 15; 119(2):381-91.
Score: 0.414
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Wang J, Gu J, Leszczynski J. Could hydrolysis of arsenic substituted DNA be prevented? Protection arises from stacking interactions. Chem Commun (Camb). 2012 Apr 14; 48(30):3626-8.
Score: 0.341
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Gu J, Wang J, Leszczynski J. Low energy electron attachment to the adenosine site of DNA. J Phys Chem B. 2011 Dec 15; 115(49):14831-7.
Score: 0.334
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Furmanchuk A, Isayev O, Gorb L, Shishkin OV, Hovorun DM, Leszczynski J. Novel view on the mechanism of water-assisted proton transfer in the DNA bases: bulk water hydration. Phys Chem Chem Phys. 2011 Mar 14; 13(10):4311-7.
Score: 0.315
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Czyznikowska Z, G?ra RW, Zalesny R, Lipkowski P, Jarzembska KN, Dominiak PM, Leszczynski J. Structural variability and the nature of intermolecular interactions in Watson-Crick B-DNA base pairs. J Phys Chem B. 2010 Jul 29; 114(29):9629-44.
Score: 0.305
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Langner KM, Sokalski WA, Leszczynski J. Intriguing relations of interaction energy components in stacked nucleic acids. J Chem Phys. 2007 Sep 21; 127(11):111102.
Score: 0.250
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Shukla MK, Leszczynski J. Electronic spectra, excited state structures and interactions of nucleic acid bases and base assemblies: a review. J Biomol Struct Dyn. 2007 Aug; 25(1):93-118.
Score: 0.248
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Crespo-Hernandez CE, Close DM, Gorb L, Leszczynski J. Determination of redox potentials for the Watson-Crick base pairs, DNA nucleosides, and relevant nucleoside analogues. J Phys Chem B. 2007 May 17; 111(19):5386-95.
Score: 0.243
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Gu J, Wang J, Rak J, Leszczynski J. Findings on the electron-attachment-induced abasic site in a DNA double helix. Angew Chem Int Ed Engl. 2007; 46(19):3479-81.
Score: 0.238
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Gu J, Wang J, Leszczynski J. Electron attachment-induced DNA single strand breaks: C3'-O3' sigma-bond breaking of pyrimidine nucleotides predominates. J Am Chem Soc. 2006 Jul 26; 128(29):9322-3.
Score: 0.231
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Bao X, Wang J, Gu J, Leszczynski J. DNA strand breaks induced by near-zero-electronvolt electron attachment to pyrimidine nucleotides. Proc Natl Acad Sci U S A. 2006 Apr 11; 103(15):5658-63.
Score: 0.226
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Burda JV, Leszczynski J. How strong can the bend be on a DNA helix from cisplatin? DFT and MP2 quantum chemical calculations of cisplatin-bridged DNA purine bases. Inorg Chem. 2003 Nov 03; 42(22):7162-72.
Score: 0.191
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Sponer J, Sponer JE, Leszczynski J. Cation-pi and amino-acceptor interactions between hydrated metal cations and DNA bases. A quantum-chemical view. J Biomol Struct Dyn. 2000 Jun; 17(6):1087-96.
Score: 0.151
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Sponer J, Flori?n J, Hobza P, Leszczynski J. Nonplanar DNA base pairs. J Biomol Struct Dyn. 1996 Apr; 13(5):827-33.
Score: 0.113
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Flori?n J, Leszczynski J. Theoretical investigation of the molecular structure of the pi kappa DNA base pair. J Biomol Struct Dyn. 1995 Apr; 12(5):1055-62.
Score: 0.105
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Gu J, Wang J, Leszczynski J. Photoinduced electron detachment and proton transfer: the proposal for alternative path of formation of triplet states of guanine (G) and cytosine (C) pair. J Phys Chem B. 2015 Feb 12; 119(6):2454-8.
Score: 0.102
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Karabulut S, Paytakov G, Leszczynski J. Reduction of aflatoxin B1 to aflatoxicol: a comprehensive DFT study provides clues to its toxicity. J Sci Food Agric. 2014 Dec; 94(15):3134-40.
Score: 0.099
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Chomicz L, Furmanchuk A, Leszczynski J, Rak J. Electron induced single strand break and cyclization: a DFT study on the radiosensitization mechanism of the nucleotide of 8-bromoguanine. Phys Chem Chem Phys. 2014 Apr 14; 16(14):6568-74.
Score: 0.098
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Gu J, Leszczynski J, Schaefer HF. Interactions of electrons with bare and hydrated biomolecules: from nucleic acid bases to DNA segments. Chem Rev. 2012 Nov 14; 112(11):5603-40.
Score: 0.087
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Gu J, Wang J, Xie Y, Leszczynski J, Schaefer HF. Structural and electronic property responses to the arsenic/phosphorus exchange in GC-related DNA of the B-form. J Comput Chem. 2012 Mar 30; 33(8):817-21.
Score: 0.085
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Szyperska A, Gajewicz A, Mazurkiewicz K, Leszczynski J, Rak J. Theoretical studies on interactions between low energy electrons and protein-DNA fragments: valence anions of AT-amino acids side chain complexes. Phys Chem Chem Phys. 2011 Nov 21; 13(43):19499-507.
Score: 0.083
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Kobylecka M, Leszczynski J, Rak J. Stability of the valence anion of cytosine is governed by nucleobases sequence in the double stranded DNA pi-stack: A computational study. J Chem Phys. 2009 Aug 28; 131(8):085103.
Score: 0.072
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Kobylecka M, Leszczynski J, Rak J. Valence anion of thymine in the DNA pi-stack. J Am Chem Soc. 2008 Nov 19; 130(46):15683-7.
Score: 0.068
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Michalkova A, Kosenkov D, Gorb L, Leszczynski J. Thermodynamics and kinetics of intramolecular water assisted proton transfer in Na+ -1-methylcytosine water complexes. J Phys Chem B. 2008 Jul 24; 112(29):8624-33.
Score: 0.066
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Gorb L, Podolyan Y, Dziekonski P, Sokalski WA, Leszczynski J. Double-proton transfer in adenine-thymine and guanine-cytosine base pairs. A post-Hartree-Fock ab initio study. J Am Chem Soc. 2004 Aug 18; 126(32):10119-29.
Score: 0.050
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Sponer J, Mokdad A, Sponer JE, Spackov? N, Leszczynski J, Leontis NB. Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs. J Mol Biol. 2003 Jul 25; 330(5):967-78.
Score: 0.047
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Dong S, Fu PP, Shirsat RN, Hwang HM, Leszczynski J, Yu H. UVA light-induced DNA cleavage by isomeric methylbenz[a]anthracenes. Chem Res Toxicol. 2002 Mar; 15(3):400-7.
Score: 0.043
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Leszczynski J. Computational studies on nucleic acid building blocks. Biopolymers. 2001-2002; 61(1):1-2.
Score: 0.039
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Sponer J, Leszczynski J, Hobza P. Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases. Biopolymers. 2001-2002; 61(1):3-31.
Score: 0.039
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Sponer J, Berger I, Spackov? N, Leszczynski J, Hobza P. Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations. J Biomol Struct Dyn. 2000; 17 Suppl 1:1-24.
Score: 0.037
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Sponer J, Sabat M, Burda JV, Doody AM, Leszczynski J, Hobza P. Stabilization of the purine.purine.pyrimidine DNA base triplets by divalent metal cations. J Biomol Struct Dyn. 1998 Aug; 16(1):139-43.
Score: 0.033
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Venkateswarlu D, Leszczynski J. Tautomeric equilibria in 8-oxopurines: implications for mutagenicity. J Comput Aided Mol Des. 1998 Jul; 12(4):373-82.
Score: 0.033
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Sponer J, Gabb HA, Leszczynski J, Hobza P. Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study. Biophys J. 1997 Jul; 73(1):76-87.
Score: 0.031
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Sponer J, Burda JV, Mejzl?k P, Leszczynski J, Hobza P. Hydrogen-bonded trimers of DNA bases and their interaction with metal cations: ab initio quantum-chemical and empirical potential study. J Biomol Struct Dyn. 1997 Apr; 14(5):613-28.
Score: 0.030
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Sponer J, Leszczynski J, Hobza P. Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies. J Biomol Struct Dyn. 1996 Aug; 14(1):117-35.
Score: 0.029
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Sponer J, Leszczynski J, Vetterl V, Hobza P. Base stacking and hydrogen bonding in protonated cytosine dimer: the role of molecular ion-dipole and induction interactions. J Biomol Struct Dyn. 1996 Feb; 13(4):695-706.
Score: 0.028
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Chomicz L, Leszczynski J, Rak J. Electron-induced degradation of 8-bromo-2'-deoxyadenosine 3',5'-diphosphate, a DNA radiosensitizing nucleotide. J Phys Chem B. 2013 Jul 25; 117(29):8681-8.
Score: 0.023
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Futera Z, Koval T, Leszczynski J, Gu J, Mitoraj M, Srebro M, Burda JV. Exploring a reaction mechanism for acetato ligand replacement in paddlewheel tetrakisacetatodirhodium (II,II) complex by ammonia: computational density functional theory study. J Phys Chem A. 2011 Feb 10; 115(5):784-94.
Score: 0.020
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Sponer JE, V?zquez-Mayagoitia A, Sumpter BG, Leszczynski J, Sponer J, Otyepka M, Ban?s P, Fuentes-Cabrera M. Theoretical studies on the intermolecular interactions of potentially primordial base-pair analogues. Chemistry. 2010 Mar 08; 16(10):3057-65.
Score: 0.019
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Szyperska A, Rak J, Leszczynski J, Li X, Ko YJ, Wang H, Bowen KH. Valence anions of 9-methylguanine-1-methylcytosine complexes. Computational and photoelectron spectroscopy studies. J Am Chem Soc. 2009 Feb 25; 131(7):2663-9.
Score: 0.017