DINLER ANTUNES to Protein Binding
This is a "connection" page, showing publications DINLER ANTUNES has written about Protein Binding.
Connection Strength
0.639
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Antunes DA, Devaurs D, Moll M, Liz?e G, Kavraki LE. General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept. Sci Rep. 2018 03 12; 8(1):4327.
Score: 0.109
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Antunes DA, Moll M, Devaurs D, Jackson KR, Liz?e G, Kavraki LE. DINC 2.0: A New Protein-Peptide Docking Webserver Using an Incremental Approach. Cancer Res. 2017 11 01; 77(21):e55-e57.
Score: 0.106
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Antunes DA, Devaurs D, Kavraki LE. Understanding the challenges of protein flexibility in drug design. Expert Opin Drug Discov. 2015 Dec; 10(12):1301-13.
Score: 0.092
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Antunes DA, Vieira GF, Rigo MM, Cibulski SP, Sinigaglia M, Chies JA. Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC:peptide complexes to cross-reactivity assessment. PLoS One. 2010 Apr 26; 5(4):e10353.
Score: 0.063
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Alves CC, Lewis J, Antunes DA, Donadi EA. The Role of Vimentin Peptide Citrullination in the Structure and Dynamics of HLA-DRB1 Rheumatoid Arthritis Risk-Associated Alleles. Int J Mol Sci. 2024 Dec 24; 26(1).
Score: 0.044
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Fasoulis R, Rigo MM, Liz?e G, Antunes DA, Kavraki LE. APE-Gen2.0: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries. J Chem Inf Model. 2024 03 11; 64(5):1730-1750.
Score: 0.041
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Conev A, Devaurs D, Rigo MM, Antunes DA, Kavraki LE. 3pHLA-score improves structure-based peptide-HLA binding affinity prediction. Sci Rep. 2022 06 24; 12(1):10749.
Score: 0.037
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Abella JR, Antunes D, Jackson K, Liz?e G, Clementi C, Kavraki LE. Markov state modeling reveals alternative unbinding pathways for peptide-MHC complexes. Proc Natl Acad Sci U S A. 2020 12 01; 117(48):30610-30618.
Score: 0.033
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Abella JR, Antunes DA, Clementi C, Kavraki LE. Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests. Front Immunol. 2020; 11:1583.
Score: 0.032
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Soon CF, Zhang S, Suneetha PV, Antunes DA, Manns MP, Raha S, Schultze-Florey C, Prinz I, Wedemeyer H, S?llberg Chen M, Cornberg M. Hepatitis E Virus (HEV)-Specific T Cell Receptor Cross-Recognition: Implications for Immunotherapy. Front Immunol. 2019; 10:2076.
Score: 0.030
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Abella JR, Antunes DA, Clementi C, Kavraki LE. APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations. Molecules. 2019 Mar 02; 24(5).
Score: 0.029
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Rigo MM, Antunes DA, Vaz de Freitas M, Fabiano de Almeida Mendes M, Meira L, Sinigaglia M, Vieira GF. DockTope: a Web-based tool for automated pMHC-I modelling. Sci Rep. 2015 Dec 17; 5:18413.
Score: 0.023