DINLER ANTUNES to Models, Molecular
This is a "connection" page, showing publications DINLER ANTUNES has written about Models, Molecular.
Connection Strength
0.808
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Abella JR, Antunes D, Jackson K, Liz?e G, Clementi C, Kavraki LE. Markov state modeling reveals alternative unbinding pathways for peptide-MHC complexes. Proc Natl Acad Sci U S A. 2020 12 01; 117(48):30610-30618.
Score: 0.130
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Abella JR, Antunes DA, Clementi C, Kavraki LE. Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests. Front Immunol. 2020; 11:1583.
Score: 0.128
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Devaurs D, Antunes DA, Kavraki LE. Revealing Unknown Protein Structures Using Computational Conformational Sampling Guided by Experimental Hydrogen-Exchange Data. Int J Mol Sci. 2018 Oct 31; 19(11).
Score: 0.113
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Antunes DA, Moll M, Devaurs D, Jackson KR, Liz?e G, Kavraki LE. DINC 2.0: A New Protein-Peptide Docking Webserver Using an Incremental Approach. Cancer Res. 2017 11 01; 77(21):e55-e57.
Score: 0.106
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Antunes DA, Devaurs D, Kavraki LE. Understanding the challenges of protein flexibility in drug design. Expert Opin Drug Discov. 2015 Dec; 10(12):1301-13.
Score: 0.091
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Sinigaglia M, Antunes DA, Rigo MM, Chies JA, Vieira GF. CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes. Database (Oxford). 2013; 2013:bat002.
Score: 0.076
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Antunes DA, Rigo MM, Silva JP, Cibulski SP, Sinigaglia M, Chies JA, Vieira GF. Structural in silico analysis of cross-genotype-reactivity among naturally occurring HCV NS3-1073-variants in the context of HLA-A*02:01 allele. Mol Immunol. 2011 Jul; 48(12-13):1461-7.
Score: 0.067
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Abella JR, Antunes DA, Clementi C, Kavraki LE. APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations. Molecules. 2019 Mar 02; 24(5).
Score: 0.029
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Rigo MM, Antunes DA, Vaz de Freitas M, Fabiano de Almeida Mendes M, Meira L, Sinigaglia M, Vieira GF. DockTope: a Web-based tool for automated pMHC-I modelling. Sci Rep. 2015 Dec 17; 5:18413.
Score: 0.023
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Mendes MF, Antunes DA, Rigo MM, Sinigaglia M, Vieira GF. Improved structural method for T-cell cross-reactivity prediction. Mol Immunol. 2015 Oct; 67(2 Pt B):303-10.
Score: 0.022
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Figueiredo DF, Antunes DA, Rigo MM, Mendes MF, Silva JP, Mayer FQ, Matte U, Giugliani R, Vieira GF, Sinigaglia M. Lessons from molecular modeling human a-L-iduronidase. J Mol Graph Model. 2014 Nov; 54:107-13.
Score: 0.021