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Talima Pearson

TitleAssociate Research Professor
Faculty RankAssociate Research Professor
InstitutionNorthern Arizona University
DepartmentBiological Sciences
AddressPO Box 5640
Flagstaff AZ 86011
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    R15AI101913     (PEARSON, TALIMA ROSS)Aug 20, 2013 - Jul 31, 2016
    NIH
    Environmental sampling of Leptospira species to link to human leptospirosis cases
    Role: Principal Investigator

    R15AI156771     (PEARSON, TALIMA ROSS)Dec 17, 2020 - Nov 30, 2022
    NIH
    Are Minority Health Disparities in MRSA/MSSA Infections Related to Carriage and Social Relationships?
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Panisello Yagüe D, Mihaljevic J, Mbegbu M, Wood CV, Hepp C, Kyman S, Hornstra H, Trotter R, Cope E, Pearson T. Survival of Staphylococcus aureus on sampling swabs stored at different temperatures. J Appl Microbiol. 2021 Feb 05. PMID: 33544965.
      Citations:    Fields:    
    2. Bycura D, Santos AC, Shiffer A, Kyman S, Winfree K, Sutliffe J, Pearson T, Sonderegger D, Cope E, Caporaso JG. Impact of Different Exercise Modalities on the Human Gut Microbiome. Sports (Basel). 2021 Jan 21; 9(2). PMID: 33494210.
      Citations:    
    3. Miller E, Barragan V, Chiriboga J, Weddell C, Luna L, Jiménez DJ, Aleman J, Mihaljevic JR, Olivas S, Marks J, Izurieta R, Nieto N, Keim P, Trueba G, Caporaso JG, Pearson T. Leptospira in river and soil in a highly endemic area of Ecuador. BMC Microbiol. 2021 Jan 07; 21(1):17. PMID: 33413126.
      Citations:    Fields:    
    4. Porter WT, Barrand ZA, Wachara J, DaVall K, Mihaljevic JR, Pearson T, Salkeld DJ, Nieto NC. Predicting the current and future distribution of the western black-legged tick, Ixodes pacificus, across the Western US using citizen science collections. PLoS One. 2021; 16(1):e0244754. PMID: 33400719.
      Citations:    Fields:    
    5. Barger SD, Lininger MR, Trotter RT, Wayment HA, Mbegbu M, Kyman S, Pearson T. Educational Attainment and Staphylococcus aureus Colonization in a Hispanic Border Community: Testing Fundamental Cause Theory. mSphere. 2020 09 30; 5(5). PMID: 32999080.
      Citations:    Fields:    
    6. Pearson T, Sahl JW, Hepp CM, Handady K, Hornstra H, Vazquez AJ, Settles E, Mayo M, Kaestli M, Williamson CHD, Price EP, Sarovich DS, Cook JM, Wolken SR, Bowen RA, Tuanyok A, Foster JT, Drees KP, Kidd TJ, Bell SC, Currie BJ, Keim P. Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. PLoS Pathog. 2020 03; 16(3):e1008298. PMID: 32134991.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    7. Cocking JH, Deberg M, Schupp J, Sahl J, Wiggins K, Porty A, Hornstra HM, Hepp C, Jardine C, Furstenau TN, Schulte-Hostedde A, Fofanov VY, Pearson T. Selective whole genome amplification and sequencing of Coxiella burnetii directly from environmental samples. Genomics. 2020 03; 112(2):1872-1878. PMID: 31678592.
      Citations:    Fields:    Translation:AnimalsCells
    8. Pearson T, Barger SD, Lininger M, Wayment H, Hepp C, Villa F, Tucker-Morgan K, Kyman S, Cabrera M, Hurtado K, Menard A, Fulbright K, Wood C, Mbegbu M, Zambrano Y, Fletcher A, Medina-Rodriguez S, Manone M, Aguirre A, Milner T, Trotter Ii RT. Health Disparities in Staphylococcus aureus Transmission and Carriage in a Border Region of the United States Based on Cultural Differences in Social Relationships: Protocol for a Survey Study. JMIR Res Protoc. 2019 Sep 27; 8(9):e14853. PMID: 31573953.
      Citations:    
    9. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Sep; 37(9):1091. PMID: 31399723.
      Citations: 21     Fields:    
    10. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857. PMID: 31341288.
      Citations: 682     Fields:    Translation:Humans
    11. Pearson T, Caporaso JG, Yellowhair M, Bokulich NA, Padi M, Roe DJ, Wertheim BC, Linhart M, Martinez JA, Bilagody C, Hornstra H, Alberts DS, Lance P, Thompson PA. Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development. Cancer Med. 2019 02; 8(2):617-628. PMID: 30652422.
      Citations: 8     Fields:    Translation:HumansCTClinical Trials
    12. Baker AL, Pearson T, Sahl JW, Hepp C, Price EP, Sarovich DS, Mayo M, Tuanyok A, Currie BJ, Keim P, Warner J. Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history. PLoS One. 2018; 13(11):e0206845. PMID: 30395628.
      Citations: 2     Fields:    Translation:HumansCells
    13. Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, Pearson T. Corrigendum: Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity. Microb Genom. 2018 10; 4(10). PMID: 30383521.
      Citations:    Fields:    
    14. Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, Pearson T. Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity. Microb Genom. 2018 09; 4(9). PMID: 30035711.
      Citations: 7     Fields:    Translation:Cells
    15. Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P. Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. Genome Announc. 2018 Mar 15; 6(11). PMID: 29545292.
      Citations:    
    16. Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, Foster JT. Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome. mBio. 2017 12 12; 8(6). PMID: 29233897.
      Citations: 15     Fields:    Translation:AnimalsCells
    17. Beare PA, Jeffrey BM, Martens CA, Pearson T, Heinzen RA. Draft Genome Sequences of Historical Strains of Coxiella burnetii Isolated from Cow's Milk and a Goat Placenta. Genome Announc. 2017 Sep 28; 5(39). PMID: 28963210.
      Citations:    
    18. Barragan V, Olivas S, Keim P, Pearson T. Critical Knowledge Gaps in Our Understanding of Environmental Cycling and Transmission of Leptospira spp. Appl Environ Microbiol. 2017 10 01; 83(19). PMID: 28754706.
      Citations: 16     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    19. Barragan V, Nieto N, Keim P, Pearson T. Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities. BMC Res Notes. 2017 Jan 28; 10(1):71. PMID: 28129788.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    20. Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P. A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. mBio. 2016 Sep 27; 7(5). PMID: 27677796.
      Citations: 19     Fields:    
    21. Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. mBio. 2016 09 20; 7(5). PMID: 27651357.
      Citations: 11     Fields:    Translation:HumansCells
    22. Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, Reyes S, de la Cruz C, Keim P, Hartskeerl R, Trueba G, Pearson T. High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador. PLoS Negl Trop Dis. 2016 09; 10(9):e0004990. PMID: 27622673.
      Citations: 12     Fields:    Translation:HumansAnimalsCells
    23. Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, Pearson T. Massive dispersal of Coxiella burnetii among cattle across the United States. Microb Genom. 2016 08; 2(8):e000068. PMID: 28348863.
      Citations: 5     Fields:    Translation:AnimalsCells
    24. Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P. KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae. J Clin Microbiol. 2016 10; 54(10):2582-96. PMID: 27510832.
      Citations: 11     Fields:    Translation:HumansCellsPHPublic Health
    25. Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF. Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment. Vector Borne Zoonotic Dis. 2016 09; 16(9):588-94. PMID: 27304166.
      Citations: 8     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    26. Barragan V, Sahl JW, Wiggins K, Chiriboga J, Salinas A, Cantos NE, Loor MN, Intriago BI, Morales M, Trueba G, Pearson T. Draft Genome Sequence of the First Pathogenic Leptospira Isolates from Ecuador. Genome Announc. 2016 May 05; 4(3). PMID: 27151788.
      Citations:    
    27. Pearson T, Cocking JH, Hornstra HM, Keim P. False detection of Coxiella burnetii-what is the risk? FEMS Microbiol Lett. 2016 May; 363(10). PMID: 27190242.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    28. Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, Sahl J, Wagner DM. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. EBioMedicine. 2015 Nov; 2(11):1613-8. PMID: 26870786.
      Citations: 10     Fields:    Translation:HumansCellsPHPublic Health
    29. Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ. Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana. BMC Vet Res. 2015 Aug 07; 11:186. PMID: 26248712.
      Citations: 7     Fields:    Translation:AnimalsCells
    30. Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. mBio. 2014 Nov 04; 5(6):e01721. PMID: 25370488.
      Citations: 28     Fields:    Translation:CellsPHPublic Health
    31. Price EP, Sarovich DS, Viberg L, Mayo M, Kaestli M, Tuanyok A, Foster JT, Keim P, Pearson T, Currie BJ. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. J Clin Microbiol. 2015 Jan; 53(1):282-6. PMID: 25339397.
      Citations: 17     Fields:    Translation:HumansCells
    32. Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, Witte A, Wernery U. Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. PLoS Negl Trop Dis. 2014 Sep; 8(9):e3195. PMID: 25255232.
      Citations: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    33. Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P. Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. Genome Announc. 2014 Sep 18; 2(5). PMID: 25237016.
      Citations:    
    34. Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. PLoS One. 2014; 9(7):e102651. PMID: 25047912.
      Citations: 8     Fields:    Translation:HumansCells
    35. Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Á, Balla E, Keim PS, Gyuranecz M. Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes. BMC Vet Res. 2014 May 07; 10:107. PMID: 24885415.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    36. Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, Petersen JM, Keim P, Wagner DM. Francisella tularensis subsp. tularensis group A.I, United States. Emerg Infect Dis. 2014 May; 20(5):861-5. PMID: 24755401.
      Citations: 7     Fields:    Translation:HumansCells
    37. Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, Priestley RA, Kondas AV, Clark Friedman CL, Price EP, Schupp JM, Liu CM, Price LB, Massung RF, Kersh GJ, Keim P. High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk. BMC Microbiol. 2014 Feb 17; 14:41. PMID: 24533573.
      Citations: 19     Fields:    Translation:AnimalsCells
    38. Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, Earn DJ, Dewitte S, Rouillard JM, Grupe G, Wiechmann I, Bliska JB, Keim PS, Scholz HC, Holmes EC, Poinar H. Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis. Lancet Infect Dis. 2014 Apr; 14(4):319-26. PMID: 24480148.
      Citations: 86     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    39. Price LB, Johnson JR, Aziz M, Clabots C, Johnston B, Tchesnokova V, Nordstrom L, Billig M, Chattopadhyay S, Stegger M, Andersen PS, Pearson T, Riddell K, Rogers P, Scholes D, Kahl B, Keim P, Sokurenko EV. The epidemic of extended-spectrum-ß-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx. mBio. 2013 Dec 17; 4(6):e00377-13. PMID: 24345742.
      Citations: 152     Fields:    Translation:HumansCellsPHPublic Health
    40. Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D. Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence. J Bacteriol. 2014 Mar; 196(5):920-30. PMID: 24336939.
      Citations: 41     Fields:    Translation:Cells
    41. Price EP, Sarovich DS, Webb JR, Ginther JL, Mayo M, Cook JM, Seymour ML, Kaestli M, Theobald V, Hall CM, Busch JD, Foster JT, Keim P, Wagner DM, Tuanyok A, Pearson T, Currie BJ. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS One. 2013; 8(8):e71647. PMID: 23967229.
      Citations: 9     Fields:    Translation:CellsPHPublic Health
    42. Price EP, Sarovich DS, Mayo M, Tuanyok A, Drees KP, Kaestli M, Beckstrom-Sternberg SM, Babic-Sternberg JS, Kidd TJ, Bell SC, Keim P, Pearson T, Currie BJ. Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. mBio. 2013 Jul 16; 4(4). PMID: 23860767.
      Citations: 61     Fields:    Translation:HumansCells
    43. Pearson T, Hornstra HM, Sahl JW, Schaack S, Schupp JM, Beckstrom-Sternberg SM, O'Neill MW, Priestley RA, Champion MD, Beckstrom-Sternberg JS, Kersh GJ, Samuel JE, Massung RF, Keim P. When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii. Syst Biol. 2013 Sep; 62(5):752-62. PMID: 23736103.
      Citations: 21     Fields:    Translation:Cells
    44. Sarovich DS, Price EP, Limmathurotsakul D, Cook JM, Von Schulze AT, Wolken SR, Keim P, Peacock SJ, Pearson T. Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infect Drug Resist. 2012; 5:129-32. PMID: 22977307.
      Citations:    
    45. Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, Vipond R, Foster JT, Bergman NH, Burans J, Pearson T, Brooks T, Keim P. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerg Infect Dis. 2012 Aug; 18(8):1307-13. PMID: 22840345.
      Citations: 33     Fields:    Translation:HumansCellsPHPublic Health
    46. Foster JT, Price LB, Beckstrom-Sternberg SM, Pearson T, Brown WD, Kiesling DM, Allen CA, Liu CM, Beckstrom-Sternberg J, Roberto FF, Keim P. Genotyping of Brucella species using clade specific SNPs. BMC Microbiol. 2012 Jun 19; 12:110. PMID: 22712667.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    47. Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, Foster JT, Tan P, Tuanyok A, Limmathurotsakul D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Pearson T. Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One. 2012; 7(5):e37723. PMID: 22624061.
      Citations: 19     Fields:    Translation:Cells
    48. Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, Currie BJ. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. J Clin Microbiol. 2012 Jun; 50(6):2059-62. PMID: 22442327.
      Citations: 14     Fields:    Translation:HumansCells
    49. Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, Keim PS. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS One. 2012; 7(3):e32866. PMID: 22438886.
      Citations: 30     Fields:    Translation:HumansCells
    50. Price LB, Stegger M, Hasman H, Aziz M, Larsen J, Andersen PS, Pearson T, Waters AE, Foster JT, Schupp J, Gillece J, Driebe E, Liu CM, Springer B, Zdovc I, Battisti A, Franco A, Zmudzki J, Schwarz S, Butaye P, Jouy E, Pomba C, Porrero MC, Ruimy R, Smith TC, Robinson DA, Weese JS, Arriola CS, Yu F, Laurent F, Keim P, Skov R, Aarestrup FM. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. mBio. 2012; 3(1). PMID: 22354957.
      Citations: 239     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    51. Sarovich DS, Price EP, Von Schulze AT, Cook JM, Mayo M, Watson LM, Richardson L, Seymour ML, Tuanyok A, Engelthaler DM, Pearson T, Peacock SJ, Currie BJ, Keim P, Wagner DM. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. PLoS One. 2012; 7(2):e30789. PMID: 22363490.
      Citations: 33     Fields:    Translation:HumansCells
    52. Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. PLoS One. 2011; 6(12):e29323. PMID: 22195045.
      Citations: 14     Fields:    Translation:Cells
    53. Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, Keim P, Pearson T. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Negl Trop Dis. 2011 Dec; 5(12):e1381. PMID: 22180792.
      Citations: 19     Fields:    Translation:HumansCells
    54. Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. PLoS One. 2011; 6(12):e28274. PMID: 22174783.
      Citations: 17     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    55. Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. PLoS One. 2011; 6(12):e28550. PMID: 22163313.
      Citations: 40     Fields:    Translation:Animals
    56. Hornstra HM, Priestley RA, Georgia SM, Kachur S, Birdsell DN, Hilsabeck R, Gates LT, Samuel JE, Heinzen RA, Kersh GJ, Keim P, Massung RF, Pearson T. Rapid typing of Coxiella burnetii. PLoS One. 2011; 6(11):e26201. PMID: 22073151.
      Citations: 34     Fields:    Translation:Cells
    57. Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". mBio. 2011; 2(6):e00245-11. PMID: 22045990.
      Citations: 2     Fields:    Translation:HumansCells
    58. Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, Blaney DD, Wagner DM, Mayo M, Currie BJ, Keim P, Tuanyok A. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. PLoS Negl Trop Dis. 2011 Oct; 5(10):e1347. PMID: 22028940.
      Citations: 12     Fields:    Translation:HumansCells
    59. Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P. An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. BMC Genomics. 2011 Sep 30; 12:477. PMID: 21962024.
      Citations: 15     Fields:    Translation:Cells
    60. Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. mBio. 2011; 2(4):e00157-11. PMID: 21862630.
      Citations: 124     Fields:    Translation:HumansCellsPHPublic Health
    61. Chanturia G, Birdsell DN, Kekelidze M, Zhgenti E, Babuadze G, Tsertsvadze N, Tsanava S, Imnadze P, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Champion MD, Sinari S, Gyuranecz M, Farlow J, Pettus AH, Kaufman EL, Busch JD, Pearson T, Foster JT, Vogler AJ, Wagner DM, Keim P. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. BMC Microbiol. 2011 Jun 17; 11:139. PMID: 21682874.
      Citations: 18     Fields:    Translation:Cells
    62. Baker A, Pearson T, Price EP, Dale J, Keim P, Hornstra H, Greenhill A, Padilla G, Warner J. Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea. PLoS One. 2011 Mar 31; 6(3):e18343. PMID: 21483841.
      Citations: 10     Fields:    Translation:Cells
    63. Price EP, Matthews MA, Beaudry JA, Allred JL, Schupp JM, Birdsell DN, Pearson T, Keim P. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis. 2010 Dec; 31(23-24):3881-8. PMID: 21064143.
      Citations: 5     Fields:    Translation:Cells
    64. Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, Tuanyok A, Wagner DM, Currie BJ, Keim PS. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. PLoS One. 2010 Nov 12; 5(11):e15413. PMID: 21103048.
      Citations: 16     Fields:    Translation:HumansAnimalsCells
    65. Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, Sung WK, Woods D, Titball RW, Beacham I, Peak I, Keim P, Nierman WC, Tan P. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PLoS Pathog. 2010 Apr 01; 6(4):e1000845. PMID: 20368977.
      Citations: 46     Fields:    Translation:AnimalsCells
    66. Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, Keim P. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog. 2010 Jan 15; 6(1):e1000725. PMID: 20090837.
      Citations: 29     Fields:    Translation:HumansCells
    67. Hornstra H, Pearson T, Georgia S, Liguori A, Dale J, Price E, O'Neill M, Deshazer D, Muhammad G, Saqib M, Naureen A, Keim P. Molecular epidemiology of glanders, Pakistan. Emerg Infect Dis. 2009 Dec; 15(12):2036-9. PMID: 19961695.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    68. Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol. 2009 Nov 18; 7:78. PMID: 19922616.
      Citations: 94     Fields:    Translation:HumansCells
    69. Pearson T, Okinaka RT, Foster JT, Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect Genet Evol. 2009 Sep; 9(5):1010-9. PMID: 19477301.
      Citations: 56     Fields:    Translation:Cells
    70. Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P. Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol. 2009 Apr 15; 9:71. PMID: 19368722.
      Citations: 37     Fields:    Translation:Cells
    71. Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Trim CP, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, Keim P. Pre-Columbian origins for North American anthrax. PLoS One. 2009; 4(3):e4813. PMID: 19283072.
      Citations: 30     Fields:    Translation:HumansCells
    72. Vogler AJ, Birdsell D, Price LB, Bowers JR, Beckstrom-Sternberg SM, Auerbach RK, Beckstrom-Sternberg JS, Johansson A, Clare A, Buchhagen JL, Petersen JM, Pearson T, Vaissaire J, Dempsey MP, Foxall P, Engelthaler DM, Wagner DM, Keim P. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. J Bacteriol. 2009 Apr; 191(8):2474-84. PMID: 19251856.
      Citations: 81     Fields:    Translation:Cells
    73. Foster JT, Beckstrom-Sternberg SM, Pearson T, Beckstrom-Sternberg JS, Chain PS, Roberto FF, Hnath J, Brettin T, Keim P. Whole-genome-based phylogeny and divergence of the genus Brucella. J Bacteriol. 2009 Apr; 191(8):2864-70. PMID: 19201792.
      Citations: 64     Fields:    Translation:HumansAnimalsCells
    74. Currie BJ, Haslem A, Pearson T, Hornstra H, Leadem B, Mayo M, Gal D, Ward L, Godoy D, Spratt BG, Keim P. Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Emerg Infect Dis. 2009 Feb; 15(2):169-74. PMID: 19193259.
      Citations: 18     Fields:    Translation:HumansCellsPHPublic Health
    75. Kenefic LJ, Pearson T, Okinaka RT, Chung WK, Max T, Trim CP, Beaudry JA, Schupp JM, Van Ert MN, Marston CK, Gutierrez K, Swinford AK, Hoffmaster AR, Keim P. Texas isolates closely related to Bacillus anthracis Ames. Emerg Infect Dis. 2008 Sep; 14(9):1494-6. PMID: 18760033.
      Citations: 6     Fields:    Translation:Cells
    76. Keim P, Pearson T, Okinaka R. Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Anal Chem. 2008 Jul 01; 80(13):4791-9. PMID: 18609763.
      Citations: 4     Fields:    Translation:HumansCells
    77. Okinaka RT, Henrie M, Hill KK, Lowery KS, Van Ert M, Pearson T, Schupp J, Kenefic L, Beaudry J, Hofstadler SA, Jackson PJ, Keim P. Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue. Emerg Infect Dis. 2008 Apr; 14(4):653-6. PMID: 18394287.
      Citations: 15     Fields:    Translation:HumansCellsPHPublic Health
    78. Tuanyok A, Auerbach RK, Brettin TS, Bruce DC, Munk AC, Detter JC, Pearson T, Hornstra H, Sermswan RW, Wuthiekanun V, Peacock SJ, Currie BJ, Keim P, Wagner DM. A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. J Bacteriol. 2007 Dec; 189(24):9044-9. PMID: 17933898.
      Citations: 50     Fields:    Translation:HumansCellsPHPublic Health
    79. U'ren JM, Hornstra H, Pearson T, Schupp JM, Leadem B, Georgia S, Sermswan RW, Keim P. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Appl Environ Microbiol. 2007 Oct; 73(20):6678-81. PMID: 17720819.
      Citations: 14     Fields:    Translation:CellsPHPublic Health
    80. Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, Coker PR, Smith KL, Wang B, Kenefic LJ, Fraser-Liggett CM, Wagner DM, Keim P. Global genetic population structure of Bacillus anthracis. PLoS One. 2007 May 23; 2(5):e461. PMID: 17520020.
      Citations: 137     Fields:    Translation:Cells
    81. U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, Gal D, Mayo MJ, Wagner D, Currie BJ, Keim P. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol. 2007 Mar 30; 7:23. PMID: 17397553.
      Citations: 26     Fields:    Translation:Cells
    82. Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, Wagner DM, Keim P, Currie BJ. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infect Genet Evol. 2007 Jul; 7(4):416-23. PMID: 17258514.
      Citations: 22     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    83. Vogler AJ, Keys CE, Allender C, Bailey I, Girard J, Pearson T, Smith KL, Wagner DM, Keim P. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutat Res. 2007 Mar 01; 616(1-2):145-58. PMID: 17161849.
      Citations: 32     Fields:    Translation:AnimalsCellsPHPublic Health
    84. Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, Keim P. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. J Clin Microbiol. 2007 Jan; 45(1):47-53. PMID: 17093023.
      Citations: 50     Fields:    Translation:HumansCells
    85. Okinaka R, Pearson T, Keim P. Anthrax, but not Bacillus anthracis? PLoS Pathog. 2006 Nov; 2(11):e122. PMID: 17121463.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    86. U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol. 2005 Nov; 43(11):5771-4. PMID: 16272516.
      Citations: 22     Fields:    Translation:Cells
    87. Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A. 2004 Sep 14; 101(37):13536-41. PMID: 15347815.
      Citations: 126     Fields:    Translation:Cells
    88. Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol. 2004 Sep; 4(3):205-13. PMID: 15450200.
      Citations: 125     Fields:    Translation:HumansAnimalsCells
    89. Price LB, Vogler A, Pearson T, Busch JD, Schupp JM, Keim P. In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrob Agents Chemother. 2003 Jul; 47(7):2362-5. PMID: 12821500.
      Citations: 56     Fields:    Translation:Cells
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