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Kun Zhang

TitleFaculty, Computer Science
Faculty RankProfessor
InstitutionXavier University of Louisiana
DepartmentComputer Science
AddressXavier University of Louisiana
1 Drexel Drive
Computer Science
New Orleans LA 70125
Phone5045206700
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Toro TB, Skripnikova EV, Bornes KE, Zhang K, Watt TJ. Endogenous expression of inactive lysine deacetylases reveals deacetylation-dependent cellular mechanisms. PLoS One. 2023; 18(9):e0291779. PMID: 37721967.
      Citations:    Fields:    Translation:Cells
    2. Zhang W, Zhang K. Quantifying the Contributions of Environmental Factors to Prostate Cancer and Detecting Risk-Related Diet Metrics and Racial Disparities. Cancer Inform. 2023; 22:11769351231168006. PMID: 37139178.
      Citations:    
    3. Lu Y, Kwong K, Wells J, Edwards A, Chen Z, Tseng TS, Zhang K. Quitting smoking after a cancer diagnosis is associated with high-risk neutrophil-to-lymphocyte ratio among tobacco use-related cancer survivors. Sci Rep. 2023 02 16; 13(1):2745. PMID: 36797297.
      Citations: 1     Fields:    Translation:HumansCells
    4. Zhang W, Zhang K. A transcriptomic signature for prostate cancer relapse prediction identified from the differentially expressed genes between TP53 mutant and wild-type tumors. Sci Rep. 2022 06 22; 12(1):10561. PMID: 35732666.
      Citations:    Fields:    Translation:HumansCells
    5. Chen Z, Lu Y, Cao B, Zhang W, Edwards A, Zhang K. Driver gene detection through Bayesian network integration of mutation and expression profiles. Bioinformatics. 2022 05 13; 38(10):2781-2790. PMID: 35561191.
      Citations:    Fields:    Translation:Humans
    6. Zhang W, Dong Y, Sartor O, Zhang K. Deciphering the Increased Prevalence of TP53 Mutations in Metastatic Prostate Cancer. Cancer Inform. 2022; 21:11769351221087046. PMID: 35392296.
      Citations:    
    7. Zhang W, Nicholson T, Zhang K. Deciphering the Polygenic Basis of Racial Disparities in Prostate Cancer By an Integrative Analysis of Genomic and Transcriptomic Data. Cancer Prev Res (Phila). 2022 03 01; 15(3):161-171. PMID: 34965922.
      Citations: 1     Fields:    Translation:HumansCells
    8. Lu Y, Edwards A, Chen Z, Tseng TS, Li M, Gonzalez GV, Zhang K. Insufficient Lycopene Intake Is Associated With High Risk of Prostate Cancer: A Cross-Sectional Study From the National Health and Nutrition Examination Survey (2003-2010). Front Public Health. 2021; 9:792572. PMID: 34966715.
      Citations: 7     Fields:    Translation:Humans
    9. Chen Z, Cao B, Edwards A, Deng H, Zhang K. A deep imputation and inference framework for estimating personalized and race-specific causal effects of genomic alterations on PSA. J Bioinform Comput Biol. 2021 08; 19(4):2150016. PMID: 34225568.
      Citations: 1     Fields:    Translation:Humans
    10. Lu Y, Li M, Lee GY, Zhao N, Chen Z, Edwards A, Zhang K. Seeking the exclusive binding region of phenylalkylamine derivatives on human T-type calcium channels via homology modeling and molecular dynamics simulation approach. Pharmacol Res Perspect. 2021 05; 9(3):e00783. PMID: 33984189.
      Citations: 1     Fields:    Translation:Humans
    11. Zhang W, Dong Y, Sartor O, Zhang K. Comprehensive Analysis of Multiple Cohort Datasets Deciphers the Utility of Germline Single-Nucleotide Polymorphisms in Prostate Cancer Diagnosis. Cancer Prev Res (Phila). 2021 07; 14(7):741-752. PMID: 33866309.
      Citations: 2     Fields:    Translation:HumansCells
    12. Chen Z, Fang Z, Sheng V, Zhao J, Fan W, Edwards A, Zhang K. Adaptive Robust Local Online Density Estimation for Streaming Data. Int J Mach Learn Cybern. 2021 Jun; 12(6):1803-1824. PMID: 34149955.
      Citations:    
    13. Zhang W, Dong Y, Zhang K. Gene expression analysis reveals a pitfall in the molecular research of prostate tumors relevant to Gleason score. J Bioinform Comput Biol. 2020 10; 18(5):2050032. PMID: 32938283.
      Citations:    Fields:    Translation:Humans
    14. Zhang W, Dong Y, Sartor O, Flemington EK, Zhang K. SEER and Gene Expression Data Analysis Deciphers Racial Disparity Patterns in Prostate Cancer Mortality and the Public Health Implication. Sci Rep. 2020 04 22; 10(1):6820. PMID: 32321981.
      Citations: 5     Fields:    Translation:HumansPHPublic Health
    15. Chen Z, Edwards A, Hicks C, Zhang K. Inferring Personalized and Race-Specific Causal Effects of Genomic Aberrations on Gleason Scores: A Deep Latent Variable Model. Front Oncol. 2020; 10:272. PMID: 32231997.
      Citations:    
    16. Zhang W, Flemington EK, Deng HW, Zhang K. Epigenetically Silenced Candidate Tumor Suppressor Genes in Prostate Cancer: Identified by Modeling Methylation Stratification and Applied to Progression Prediction. Cancer Epidemiol Biomarkers Prev. 2019 01; 28(1):198-207. PMID: 30262601.
      Citations: 2     Fields:    Translation:HumansCells
    17. Zhang W, Flemington EK, Zhang K. Driver gene mutations based clustering of tumors: methods and applications. Bioinformatics. 2018 07 01; 34(13):i404-i411. PMID: 29950003.
      Citations: 4     Fields:    Translation:Humans
    18. Zhang W, Edwards A, Flemington EK, Zhang K. Racial disparities in patient survival and tumor mutation burden, and the association between tumor mutation burden and cancer incidence rate. Sci Rep. 2017 10 20; 7(1):13639. PMID: 29057889.
      Citations: 22     Fields:    Translation:Humans
    19. Chen Z, Fang Z, Fan W, Edwards A, Zhang K. CSTG: An Effective Framework for Cost-sensitive Sparse Online Learning. SIAM Rev Soc Ind Appl Math. 2017 Apr; 2017:759-767. PMID: 29861512.
      Citations:    
    20. Zhang W, Edwards A, Flemington EK, Zhang K. Significant Prognostic Features and Patterns of Somatic TP53 Mutations in Human Cancers. Cancer Inform. 2017; 16:1176935117691267. PMID: 28469388.
      Citations:    
    21. Mei S, Zhang K. Multi-label l2-regularized logistic regression for predicting activation/inhibition relationships in human protein-protein interaction networks. Sci Rep. 2016 11 07; 6:36453. PMID: 27819359.
      Citations: 1     Fields:    Translation:HumansCells
    22. Mei S, Zhang K. Computational discovery of Epstein-Barr virus targeted human genes and signalling pathways. Sci Rep. 2016 07 29; 6:30612. PMID: 27470517.
      Citations: 7     Fields:    Translation:HumansCells
    23. Zhang W, Flemington EK, Zhang K. Mutant TP53 disrupts age-related accumulation patterns of somatic mutations in multiple cancer types. Cancer Genet. 2016 09; 209(9):376-380. PMID: 27751354.
      Citations: 7     Fields:    Translation:Humans
    24. Yang S, Mercante DE, Zhang K, Fang Z. An Integrated Approach for RNA-seq Data Normalization. Cancer Inform. 2016; 15:129-41. PMID: 27385909.
      Citations:    
    25. Zhang W, Edwards A, Fang Z, Flemington EK, Zhang K. Integrative Genomics and Transcriptomics Analysis Reveals Potential Mechanisms for Favorable Prognosis of Patients with HPV-Positive Head and Neck Carcinomas. Sci Rep. 2016 04 25; 6:24927. PMID: 27108969.
      Citations: 17     Fields:    Translation:Humans
    26. Liu S, Zhang Q, Chen C, Ge D, Qu Y, Chen R, Fan YM, Li N, Tang WW, Zhang W, Zhang K, Wang AR, Rowan BG, Hill SM, Sartor O, Abdel-Mageed AB, Myers L, Lin Q, You Z. Hyperinsulinemia enhances interleukin-17-induced inflammation to promote prostate cancer development in obese mice through inhibiting glycogen synthase kinase 3-mediated phosphorylation and degradation of interleukin-17 receptor. Oncotarget. 2016 Mar 22; 7(12):13651-66. PMID: 26871944.
      Citations: 22     Fields:    Translation:HumansAnimalsCells
    27. Zhang W, Edwards A, Fan W, Flemington EK, Zhang K. The modularity and dynamicity of miRNA-mRNA interactions in high-grade serous ovarian carcinomas and the prognostic implication. Comput Biol Chem. 2016 08; 63:3-14. PMID: 26949157.
      Citations: 2     Fields:    Translation:Humans
    28. Strong MJ, O'Grady T, Lin Z, Xu G, Baddoo M, Parsons C, Zhang K, Taylor CM, Flemington EK. Correction for Strong et al., Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing. J Virol. 2016 01 15; 90(2):1152. PMID: 26719559.
      Citations: 1     Fields:    
    29. Cao S, Moss W, O'Grady T, Concha M, Strong MJ, Wang X, Yu Y, Baddoo M, Zhang K, Fewell C, Lin Z, Dong Y, Flemington EK. New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription. J Virol. 2015 Jul; 89(14):7120-32. PMID: 25926645.
      Citations: 33     Fields:    Translation:HumansCells
    30. Zhang W, Edwards A, Flemington E, Zhang K. Somatic mutations favorable to patient survival are predominant in ovarian carcinomas. PLoS One. 2014; 9(11):e112561. PMID: 25390899.
      Citations: 3     Fields:    Translation:Humans
    31. Wu K, Edwards A, Fan W, Gao J, Zhang K. Classifying Imbalanced Data Streams via Dynamic Feature Group Weighting with Importance Sampling. Proc SIAM Int Conf Data Min. 2014 Apr; 2014:722-730. PMID: 25568835.
      Citations:    
    32. Wu K, Zhang K, Fan W, Edwards A, Yu PS. RS-Forest: A Rapid Density Estimator for Streaming Anomaly Detection. Proc IEEE Int Conf Data Min. 2014; 2014:600-609. PMID: 25685112.
      Citations:    
    33. Zhang W, Edwards A, Flemington EK, Zhang K. Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets. PLoS One. 2013; 8(10):e78868. PMID: 24205334.
      Citations: 3     Fields:    Translation:HumansCells
    34. Zhang W, Edwards A, Fan W, Fang Z, Deininger P, Zhang K. Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data. BMC Genomics. 2013 Aug 28; 14:584. PMID: 23984937.
      Citations: 3     Fields:    Translation:HumansCells
    35. Zhang W, Edwards A, Fan W, Flemington EK, Zhang K. miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes. PLoS One. 2012; 7(6):e40130. PMID: 22768240.
      Citations: 31     Fields:    Translation:HumansCells
    36. Zhang W, Edwards A, Zhu D, Flemington EK, Deininger P, Zhang K. miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. PLoS One. 2012; 7(2):e31429. PMID: 22348086.
      Citations: 11     Fields:    Translation:HumansCells
    37. Zhang W, Edwards A, Fan W, Deininger P, Zhang K. Alu distribution and mutation types of cancer genes. BMC Genomics. 2011 Mar 23; 12:157. PMID: 21429208.
      Citations: 22     Fields:    Translation:HumansCells
    38. Zhang W, Edwards A, Fan W, Zhu D, Zhang K. svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification. BMC Bioinformatics. 2010 Jun 22; 11:338. PMID: 20565989.
      Citations: 11     Fields:    Translation:Animals
    39. Zhang K, Fan W, Deininger P, Edwards A, Xu Z, Zhu D. Breaking the computational barrier: a divide-conquer and aggregate based approach for Alu insertion site characterisation. Int J Comput Biol Drug Des. 2009; 2(4):302-22. PMID: 20090173.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
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