Themis Lazaridis to Models, Molecular
This is a "connection" page, showing publications Themis Lazaridis has written about Models, Molecular.
Connection Strength
4.046
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Nepal B, Sepehri A, Lazaridis T. Mechanism of negative membrane curvature generation by I-BAR domains. Structure. 2021 12 02; 29(12):1440-1452.e4.
Score: 0.612
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Nepal B, Leveritt J, Lazaridis T. Membrane Curvature Sensing by Amphipathic Helices: Insights from Implicit Membrane Modeling. Biophys J. 2018 05 08; 114(9):2128-2141.
Score: 0.485
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He Y, Lazaridis T. Activity determinants of helical antimicrobial peptides: a large-scale computational study. PLoS One. 2013; 8(6):e66440.
Score: 0.345
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He Y, Prieto L, Lazaridis T. Modeling peptide binding to anionic membrane pores. J Comput Chem. 2013 Jun 30; 34(17):1463-75.
Score: 0.341
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Yuzlenko O, Lazaridis T. Membrane protein native state discrimination by implicit membrane models. J Comput Chem. 2013 Apr 05; 34(9):731-8.
Score: 0.333
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Mihajlovic M, Lazaridis T. Modeling fatty acid delivery from intestinal fatty acid binding protein to a membrane. Protein Sci. 2007 Sep; 16(9):2042-55.
Score: 0.230
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Zhang J, Lazaridis T. Calculating the free energy of association of transmembrane helices. Biophys J. 2006 Sep 01; 91(5):1710-23.
Score: 0.212
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Mottamal M, Lazaridis T. The contribution of C alpha-H...O hydrogen bonds to membrane protein stability depends on the position of the amide. Biochemistry. 2005 Feb 08; 44(5):1607-13.
Score: 0.194
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Madhusoodanan M, Lazaridis T. Investigation of pathways for the low-pH conformational transition in influenza hemagglutinin. Biophys J. 2003 Mar; 84(3):1926-39.
Score: 0.169
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Rodnin MV, Vasquez-Montes V, Nepal B, Ladokhin AS, Lazaridis T. Experimental and Computational Characterization of Oxidized and Reduced Protegrin Pores in Lipid Bilayers. J Membr Biol. 2020 06; 253(3):287-298.
Score: 0.140
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Lazaridis T, Leveritt JM, PeBenito L. Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers. Biochim Biophys Acta. 2014 Sep; 1838(9):2149-59.
Score: 0.090
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Ramos J, Lazaridis T. Computational analysis of residue contributions to coiled-coil topology. Protein Sci. 2011 Nov; 20(11):1845-55.
Score: 0.077
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Prieto L, Lazaridis T. Computational studies of colicin insertion into membranes: the closed state. Proteins. 2011 Jan; 79(1):126-41.
Score: 0.072
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Mihajlovic M, Lazaridis T. Antimicrobial peptides in toroidal and cylindrical pores. Biochim Biophys Acta. 2010 Aug; 1798(8):1485-93.
Score: 0.069
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Mihajlovic M, Lazaridis T. Antimicrobial peptides bind more strongly to membrane pores. Biochim Biophys Acta. 2010 Aug; 1798(8):1494-502.
Score: 0.069
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Zhang J, Lazaridis T. Transmembrane helix association affinity can be modulated by flanking and noninterfacial residues. Biophys J. 2009 Jun 03; 96(11):4418-27.
Score: 0.065
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Mihajlovic M, Lazaridis T. Membrane-bound structure and energetics of alpha-synuclein. Proteins. 2008 Feb 15; 70(3):761-78.
Score: 0.060
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Ramos J, Lazaridis T. Energetic determinants of oligomeric state specificity in coiled coils. J Am Chem Soc. 2006 Dec 06; 128(48):15499-510.
Score: 0.055
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Sammalkorpi M, Lazaridis T. Modeling a spin-labeled fusion peptide in a membrane: implications for the interpretation of EPR experiments. Biophys J. 2007 Jan 01; 92(1):10-22.
Score: 0.054
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Mottamal M, Lazaridis T. Voltage-dependent energetics of alamethicin monomers in the membrane. Biophys Chem. 2006 Jun 20; 122(1):50-7.
Score: 0.052
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Mottamal M, Zhang J, Lazaridis T. Energetics of the native and non-native states of the glycophorin transmembrane helix dimer. Proteins. 2006 Mar 01; 62(4):996-1009.
Score: 0.052
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Mihajlovic M, Lazaridis T. Calculations of pH-dependent binding of proteins to biological membranes. J Phys Chem B. 2006 Feb 23; 110(7):3375-84.
Score: 0.052
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Lazaridis T, Mallik B, Chen Y. Implicit solvent simulations of DPC micelle formation. J Phys Chem B. 2005 Aug 11; 109(31):15098-106.
Score: 0.050
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Lazaridis T. Implicit solvent simulations of peptide interactions with anionic lipid membranes. Proteins. 2005 Feb 15; 58(3):518-27.
Score: 0.048
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Lazaridis T. Effective energy function for proteins in lipid membranes. Proteins. 2003 Aug 01; 52(2):176-92.
Score: 0.044
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Lazaridis T, Masunov A, Gandolfo F. Contributions to the binding free energy of ligands to avidin and streptavidin. Proteins. 2002 May 01; 47(2):194-208.
Score: 0.040
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Madeo J, Mihajlovic M, Lazaridis T, Gunner MR. Slow dissociation of a charged ligand: analysis of the primary quinone Q(A) site of photosynthetic bacterial reaction centers. J Am Chem Soc. 2011 Nov 02; 133(43):17375-85.
Score: 0.019
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Hajjar E, Mihajlovic M, Witko-Sarsat V, Lazaridis T, Reuter N. Computational prediction of the binding site of proteinase 3 to the plasma membrane. Proteins. 2008 Jun; 71(4):1655-69.
Score: 0.015