Qing Li to Arabidopsis
This is a "connection" page, showing publications Qing Li has written about Arabidopsis.
Connection Strength
10.321
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Hao S, Zhang L, Zhao D, Zhou J, Ye C, Qu H, Li QQ. Inhibitor AN3661 reveals biological functions of Arabidopsis CLEAVAGE and POLYADENYLATION SPECIFICITY FACTOR 73. Plant Physiol. 2023 08 31; 193(1):537-554.
Score: 0.835
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Lin J, Hung FY, Ye C, Hong L, Shih YH, Wu K, Li QQ. HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis. Genome Res. 2020 10; 30(10):1407-1417.
Score: 0.675
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Yu Z, Lin J, Li QQ. Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation. Plant Cell. 2019 10; 31(10):2332-2352.
Score: 0.632
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Hong L, Ye C, Lin J, Fu H, Wu X, Li QQ. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J. 2018 01; 93(2):246-258.
Score: 0.563
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Lin J, Xu R, Wu X, Shen Y, Li QQ. Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination. Plant J. 2017 Sep; 91(5):829-839.
Score: 0.547
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Li QQ, Liu Z, Lu W, Liu M. Interplay between Alternative Splicing and Alternative Polyadenylation Defines the Expression Outcome of the Plant Unique OXIDATIVE TOLERANT-6 Gene. Sci Rep. 2017 05 17; 7(1):2052.
Score: 0.540
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Xing D, Li QQ. RADPRE: a computational program for identification of differential mRNA processing including alternative polyadenylation. Methods Mol Biol. 2015; 1255:57-66.
Score: 0.458
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Zhao H, Ye X, Li QQ. Characterization of plant polyadenylation complexes by using tandem affinity purification. Methods Mol Biol. 2015; 1255:69-78.
Score: 0.458
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Liu M, Xu R, Merrill C, Hong L, Von Lanken C, Hunt AG, Li QQ. Integration of developmental and environmental signals via a polyadenylation factor in Arabidopsis. PLoS One. 2014; 9(12):e115779.
Score: 0.458
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Ma L, Guo C, Li QQ. Role of alternative polyadenylation in epigenetic silencing and antisilencing. Proc Natl Acad Sci U S A. 2014 Jan 07; 111(1):9-10.
Score: 0.426
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Zhao H, Zheng J, Li QQ. A novel plant in vitro assay system for pre-mRNA cleavage during 3'-end formation. Plant Physiol. 2011 Nov; 157(3):1546-54.
Score: 0.364
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Zheng J, Xing D, Wu X, Shen Y, Kroll DM, Ji G, Li QQ. Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray. PLoS One. 2011 Feb 25; 6(2):e14719.
Score: 0.351
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Zhao H, Xing D, Li QQ. Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies. Plant Physiol. 2009 Nov; 151(3):1546-56.
Score: 0.317
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Xing D, Ni S, Kennedy MA, Li QQ. Identification of a plant-specific Zn2+-sensitive ribonuclease activity. Planta. 2009 Sep; 230(4):819-25.
Score: 0.315
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Xing D, Zhao H, Li QQ. Arabidopsis CLP1-SIMILAR PROTEIN3, an ortholog of human polyadenylation factor CLP1, functions in gametophyte, embryo, and postembryonic development. Plant Physiol. 2008 Dec; 148(4):2059-69.
Score: 0.299
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Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. BMC Genomics. 2008 May 14; 9:220.
Score: 0.289
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Xing D, Zhao H, Xu R, Li QQ. Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time. Plant J. 2008 Jun; 54(5):899-910.
Score: 0.285
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Xu R, Zhao H, Dinkins RD, Cheng X, Carberry G, Li QQ. The 73 kD subunit of the cleavage and polyadenylation specificity factor (CPSF) complex affects reproductive development in Arabidopsis. Plant Mol Biol. 2006 Jul; 61(4-5):799-815.
Score: 0.254
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Xing H, Lawrence CB, Chambers O, Davies HM, Everett NP, Li QQ. Increased pathogen resistance and yield in transgenic plants expressing combinations of the modified antimicrobial peptides based on indolicidin and magainin. Planta. 2006 Apr; 223(5):1024-32.
Score: 0.244
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Loke JC, Stahlberg EA, Strenski DG, Haas BJ, Wood PC, Li QQ. Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures. Plant Physiol. 2005 Jul; 138(3):1457-68.
Score: 0.237
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Lin X, Yin J, Wang Y, Yao J, Li QQ, Latzel V, Bossdorf O, Zhang YY. Environment-induced heritable variations are common in Arabidopsis thaliana. Nat Commun. 2024 May 30; 15(1):4615.
Score: 0.220
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Xu R, Li QQ. A RING-H2 zinc-finger protein gene RIE1 is essential for seed development in Arabidopsis. Plant Mol Biol. 2003 Sep; 53(1-2):37-50.
Score: 0.209
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Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wie?ner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biol. 2022 07 07; 23(1):149.
Score: 0.193
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Wu X, Ji G, Li QQ. Prediction of plant mRNA polyadenylation sites. Methods Mol Biol. 2015; 1255:13-23.
Score: 0.115
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Wu X, Ji G, Li QQ. Poly(A)-tag deep sequencing data processing to extract poly(A) sites. Methods Mol Biol. 2015; 1255:39-48.
Score: 0.115
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Zhao H, Li QQ. In vitro analysis of cleavage and polyadenylation in Arabidopsis. Methods Mol Biol. 2015; 1255:79-89.
Score: 0.115
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Liu M, Wu X, Li QQ. DNA/RNA hybrid primer mediated poly(A) tag library construction for Illumina sequencing. Methods Mol Biol. 2015; 1255:175-84.
Score: 0.115
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Cao J, Li QQ. Poly(A) tag library construction from 10 ng total RNA. Methods Mol Biol. 2015; 1255:185-94.
Score: 0.115
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Ma L, Pati PK, Liu M, Li QQ, Hunt AG. High throughput characterizations of poly(A) site choice in plants. Methods. 2014 May 01; 67(1):74-83.
Score: 0.103
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Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res. 2011 Sep; 21(9):1478-86.
Score: 0.090
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Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A. 2011 Jul 26; 108(30):12533-8.
Score: 0.090
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Xing D, Li QQ. Alternative polyadenylation and gene expression regulation in plants. Wiley Interdiscip Rev RNA. 2011 May-Jun; 2(3):445-58.
Score: 0.086
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Zhang J, Addepalli B, Yun KY, Hunt AG, Xu R, Rao S, Li QQ, Falcone DL. A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana. PLoS One. 2008 Jun 11; 3(6):e2410.
Score: 0.073
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Ye C, Zhao D, Ye W, Wu X, Ji G, Li QQ, Lin J. QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Brief Bioinform. 2021 11 05; 22(6).
Score: 0.046
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Ye C, Long Y, Ji G, Li QQ, Wu X. APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinformatics. 2018 06 01; 34(11):1841-1849.
Score: 0.036
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Dong M, Ji G, Li QQ, Liang C. Extraction of poly(A) sites from large-scale RNA-Seq data. Methods Mol Biol. 2015; 1255:25-37.
Score: 0.029
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Negi VS, Bingham JP, Li QX, Borthakur D. A carbon-nitrogen lyase from Leucaena leucocephala catalyzes the first step of mimosine degradation. Plant Physiol. 2014 Feb; 164(2):922-34.
Score: 0.027