Ronald Koder to Models, Molecular
This is a "connection" page, showing publications Ronald Koder has written about Models, Molecular.
Connection Strength
0.850
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Gunner MR, Koder R. The design features cells use to build their transmembrane proton gradient. Phys Biol. 2017 02 07; 14(1):013001.
Score: 0.116
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Brisendine JM, Koder RL. Fast, cheap and out of control--Insights into thermodynamic and informatic constraints on natural protein sequences from de novo protein design. Biochim Biophys Acta. 2016 May; 1857(5):485-492.
Score: 0.106
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Mutter AC, Norman JA, Tiedemann MT, Singh S, Sha S, Morsi S, Ahmed I, Stillman MJ, Koder RL. Rational design of a zinc phthalocyanine binding protein. J Struct Biol. 2014 Feb; 185(2):178-85.
Score: 0.090
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Zhang L, Anderson JL, Ahmed I, Norman JA, Negron C, Mutter AC, Dutton PL, Koder RL. Manipulating cofactor binding thermodynamics in an artificial oxygen transport protein. Biochemistry. 2011 Nov 29; 50(47):10254-61.
Score: 0.081
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Nanda V, Koder RL. Designing artificial enzymes by intuition and computation. Nat Chem. 2010 Jan; 2(1):15-24.
Score: 0.071
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Negron C, Fufezan C, Koder RL. Geometric constraints for porphyrin binding in helical protein binding sites. Proteins. 2009 Feb 01; 74(2):400-16.
Score: 0.067
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Koder RL, Walsh JD, Pometun MS, Dutton PL, Wittebort RJ, Miller AF. 15N solid-state NMR provides a sensitive probe of oxidized flavin reactive sites. J Am Chem Soc. 2006 Nov 29; 128(47):15200-8.
Score: 0.057
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Koder RL, Valentine KG, Cerda J, Noy D, Smith KM, Wand AJ, Dutton PL. Nativelike structure in designed four alpha-helix bundles driven by buried polar interactions. J Am Chem Soc. 2006 Nov 15; 128(45):14450-1.
Score: 0.057
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Koder RL, Dutton PL. Intelligent design: the de novo engineering of proteins with specified functions. Dalton Trans. 2006 Jul 07; (25):3045-51.
Score: 0.055
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Koder RL, Oyedele O, Miller AF. Retro-nitroreductase, a putative evolutionary precursor to Enterobacter cloacae strain 96-3 nitroreductase. Antioxid Redox Signal. 2001 Oct; 3(5):747-55.
Score: 0.040
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Brisendine JM, Refaely-Abramson S, Liu ZF, Cui J, Ng F, Neaton JB, Koder RL, Venkataraman L. Probing Charge Transport through Peptide Bonds. J Phys Chem Lett. 2018 Feb 15; 9(4):763-767.
Score: 0.031
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Rodriguez-Granillo A, Annavarapu S, Zhang L, Koder RL, Nanda V. Computational design of thermostabilizing D-amino acid substitutions. J Am Chem Soc. 2011 Nov 23; 133(46):18750-9.
Score: 0.020
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Braun P, Goldberg E, Negron C, von Jan M, Xu F, Nanda V, Koder RL, Noy D. Design principles for chlorophyll-binding sites in helical proteins. Proteins. 2011 Feb; 79(2):463-76.
Score: 0.019
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Xu F, Zhang L, Koder RL, Nanda V. De novo self-assembling collagen heterotrimers using explicit positive and negative design. Biochemistry. 2010 Mar 23; 49(11):2307-16.
Score: 0.018
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Huang SS, Koder RL, Lewis M, Wand AJ, Dutton PL. The HP-1 maquette: from an apoprotein structure to a structured hemoprotein designed to promote redox-coupled proton exchange. Proc Natl Acad Sci U S A. 2004 Apr 13; 101(15):5536-41.
Score: 0.012
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Haynes CA, Koder RL, Miller AF, Rodgers DW. Structures of nitroreductase in three states: effects of inhibitor binding and reduction. J Biol Chem. 2002 Mar 29; 277(13):11513-20.
Score: 0.010