Jianhua Ruan to Gene Expression Profiling
This is a "connection" page, showing publications Jianhua Ruan has written about Gene Expression Profiling.
Connection Strength
2.165
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Ruan J, Perez J, Hernandez B, Lei C, Sunter G, Sponsel VM. Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana. BMC Bioinformatics. 2011 Nov 24; 12 Suppl 12:S2.
Score: 0.321
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Ruan J. A top-performing algorithm for the DREAM3 gene expression prediction challenge. PLoS One. 2010 Feb 04; 5(2):e8944.
Score: 0.283
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Ruan J, Dean AK, Zhang W. A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Syst Biol. 2010 Feb 02; 4:8.
Score: 0.283
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Ruan J, Zhang W. A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinformatics. 2006 Feb 01; 22(3):332-40.
Score: 0.212
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Ruan J, Zhang W. CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinformatics. 2005 May 12; 6:114.
Score: 0.204
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Adnan N, Liu Z, Huang THM, Ruan J. Comparative evaluation of network features for the prediction of breast cancer metastasis. BMC Med Genomics. 2020 04 03; 13(Suppl 5):40.
Score: 0.143
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Zand M, Ruan J. Network-Based Single-Cell RNA-Seq Data Imputation Enhances Cell Type Identification. Genes (Basel). 2020 03 31; 11(4).
Score: 0.143
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Ruan J, Jahid MJ, Gu F, Lei C, Huang YW, Hsu YT, Mutch DG, Chen CL, Kirma NB, Huang TH. A novel algorithm for network-based prediction of cancer recurrence. Genomics. 2019 01; 111(1):17-23.
Score: 0.111
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Gao Z, Zhao R, Ruan J. A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genomics. 2013; 14 Suppl 1:S4.
Score: 0.087
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Jahid MJ, Ruan J. A Steiner tree-based method for biomarker discovery and classification in breast cancer metastasis. BMC Genomics. 2012; 13 Suppl 6:S8.
Score: 0.086
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Dean AK, Harris SE, Kalajzic I, Ruan J. A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. BMC Bioinformatics. 2009 Sep 17; 10 Suppl 9:S5.
Score: 0.069
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Ray M, Ruan J, Zhang W. Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases. Genome Biol. 2008 Oct 08; 9(10):R148.
Score: 0.065
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McDunn JE, Husain KD, Polpitiya AD, Burykin A, Ruan J, Li Q, Schierding W, Lin N, Dixon D, Zhang W, Coopersmith CM, Dunne WM, Colonna M, Ghosh BK, Cobb JP. Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram. PLoS One. 2008 Feb 13; 3(2):e1564.
Score: 0.062
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Zhang W, Ruan J, Ho TH, You Y, Yu T, Quatrano RS. Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinformatics. 2005 Jul 15; 21(14):3074-81.
Score: 0.051
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Lovelace DL, Gao Z, Mutoji K, Song YC, Ruan J, Hermann BP. The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia. Development. 2016 06 01; 143(11):1893-906.
Score: 0.027
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Ghosh S, Dean A, Walter M, Bao Y, Hu Y, Ruan J, Li R. Cell density-dependent transcriptional activation of endocrine-related genes in human adipose tissue-derived stem cells. Exp Cell Res. 2010 Aug 01; 316(13):2087-98.
Score: 0.018