Jianhua Ruan to Transcription Factors
This is a "connection" page, showing publications Jianhua Ruan has written about Transcription Factors.
Connection Strength
0.955
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Gao Z, Ruan J. Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning. Bioinformatics. 2017 Jul 15; 33(14):2097-2105.
Score: 0.419
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Najnin T, Saimon SH, Sunter G, Ruan J. A Network-Based Approach for Improving Annotation of Transcription Factor Functions and Binding Sites in Arabidopsis thaliana. Genes (Basel). 2023 01 21; 14(2).
Score: 0.154
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Gao Z, Liu L, Ruan J. Logo2PWM: a tool to convert sequence logo to position weight matrix. BMC Genomics. 2017 Oct 03; 18(Suppl 6):709.
Score: 0.106
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Lovelace DL, Gao Z, Mutoji K, Song YC, Ruan J, Hermann BP. The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia. Development. 2016 06 01; 143(11):1893-906.
Score: 0.096
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Gao Z, Zhao R, Ruan J. A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genomics. 2013; 14 Suppl 1:S4.
Score: 0.077
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Ruan J, Deng Y, Perkins EJ, Zhang W. An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data. BMC Genomics. 2009 Jul 07; 10 Suppl 1:S8.
Score: 0.060
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Williams J, Regedanz E, Lucinda N, Nava Fereira AR, Lacatus G, Berger M, O'Connell N, Coursey T, Ruan J, Bisaro DM, Sunter G. Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin. PLoS Pathog. 2024 Jul; 20(7):e1012399.
Score: 0.043