Jon Lynch Lynch to Plant Roots
This is a "connection" page, showing publications Jon Lynch Lynch has written about Plant Roots.
Connection Strength
31.149
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Galindo-Casta?eda T, Hartmann M, Lynch JP. Location: root architecture structures rhizosphere microbial associations. J Exp Bot. 2024 Jan 10; 75(2):594-604.
Score: 0.824
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Lopez-Valdivia I, Yang X, Lynch JP. Large root cortical cells and reduced cortical cell files improve growth under suboptimal nitrogen in silico. Plant Physiol. 2023 07 03; 192(3):2261-2275.
Score: 0.794
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Sidhu JS, Ajmera I, Arya S, Lynch JP. RootSlice-A novel functional-structural model for root anatomical phenotypes. Plant Cell Environ. 2023 05; 46(5):1671-1690.
Score: 0.773
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Rangarajan H, Hadka D, Reed P, Lynch JP. Multi-objective optimization of root phenotypes for nutrient capture using evolutionary algorithms. Plant J. 2022 07; 111(1):38-53.
Score: 0.733
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Sch?fer ED, Owen MR, Postma JA, Kuppe C, Black CK, Lynch JP. Simulating Crop Root Systems Using OpenSimRoot. Methods Mol Biol. 2022; 2395:293-323.
Score: 0.716
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Lynch JP. Harnessing root architecture to address global challenges. Plant J. 2022 01; 109(2):415-431.
Score: 0.711
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Lynch JP, Mooney SJ, Strock CF, Schneider HM. Future roots for future soils. Plant Cell Environ. 2022 03; 45(3):620-636.
Score: 0.711
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Schneider HM, Strock CF, Hanlon MT, Vanhees DJ, Perkins AC, Ajmera IB, Sidhu JS, Mooney SJ, Brown KM, Lynch JP. Multiseriate cortical sclerenchyma enhance root penetration in compacted soils. Proc Natl Acad Sci U S A. 2021 02 09; 118(6).
Score: 0.673
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Strock CF, Burridge JD, Niemiec MD, Brown KM, Lynch JP. Root metaxylem and architecture phenotypes integrate to regulate water use under drought stress. Plant Cell Environ. 2021 01; 44(1):49-67.
Score: 0.656
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Strock CF, Lynch JP. Root secondary growth: an unexplored component of soil resource acquisition. Ann Bot. 2020 07 24; 126(2):205-218.
Score: 0.648
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Vanhees DJ, Loades KW, Bengough AG, Mooney SJ, Lynch JP. Root anatomical traits contribute to deeper rooting of maize under compacted field conditions. J Exp Bot. 2020 07 06; 71(14):4243-4257.
Score: 0.646
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Schneider HM, Klein SP, Hanlon MT, Nord EA, Kaeppler S, Brown KM, Warry A, Bhosale R, Lynch JP. Genetic control of root architectural plasticity in maize. J Exp Bot. 2020 05 30; 71(10):3185-3197.
Score: 0.641
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Klein SP, Schneider HM, Perkins AC, Brown KM, Lynch JP. Multiple Integrated Root Phenotypes Are Associated with Improved Drought Tolerance. Plant Physiol. 2020 07; 183(3):1011-1025.
Score: 0.637
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Schneider HM, Klein SP, Hanlon MT, Kaeppler S, Brown KM, Lynch JP. Genetic control of root anatomical plasticity in maize. Plant Genome. 2020 03; 13(1):e20003.
Score: 0.633
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Strock CF, Schneider HM, Galindo-Casta?eda T, Hall BT, Van Gansbeke B, Mather DE, Roth MG, Chilvers MI, Guo X, Brown K, Lynch JP. Laser ablation tomography for visualization of root colonization by edaphic organisms. J Exp Bot. 2019 10 15; 70(19):5327-5342.
Score: 0.614
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Yang JT, Schneider HM, Brown KM, Lynch JP. Genotypic variation and nitrogen stress effects on root anatomy in maize are node specific. J Exp Bot. 2019 10 15; 70(19):5311-5325.
Score: 0.614
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Galindo-Casta?eda T, Brown KM, Kuldau GA, Roth GW, Wenner NG, Ray S, Schneider H, Lynch JP. Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize. Plant Cell Environ. 2019 11; 42(11):2999-3014.
Score: 0.607
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Lynch JP. Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture. New Phytol. 2019 07; 223(2):548-564.
Score: 0.590
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Jia X, Liu P, Lynch JP. Greater lateral root branching density in maize improves phosphorus acquisition from low phosphorus soil. J Exp Bot. 2018 09 14; 69(20):4961-4970.
Score: 0.570
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Lynch JP. Rightsizing root phenotypes for drought resistance. J Exp Bot. 2018 06 06; 69(13):3279-3292.
Score: 0.559
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Galindo-Casta?eda T, Brown KM, Lynch JP. Reduced root cortical burden improves growth and grain yield under low phosphorus availability in maize. Plant Cell Environ. 2018 07; 41(7):1579-1592.
Score: 0.557
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Sun B, Gao Y, Lynch JP. Large Crown Root Number Improves Topsoil Foraging and Phosphorus Acquisition. Plant Physiol. 2018 05; 177(1):90-104.
Score: 0.552
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Strock CF, Morrow de la Riva L, Lynch JP. Reduction in Root Secondary Growth as a Strategy for Phosphorus Acquisition. Plant Physiol. 2018 01; 176(1):691-703.
Score: 0.537
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Schneider HM, Postma JA, Wojciechowski T, Kuppe C, Lynch JP. Root Cortical Senescence Improves Growth under Suboptimal Availability of N, P, and K. Plant Physiol. 2017 Aug; 174(4):2333-2347.
Score: 0.524
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Schneider HM, Wojciechowski T, Postma JA, Brown KM, L?cke A, Zeisler V, Schreiber L, Lynch JP. Root cortical senescence decreases root respiration, nutrient content and radial water and nutrient transport in barley. Plant Cell Environ. 2017 Aug; 40(8):1392-1408.
Score: 0.516
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Burridge JD, Schneider HM, Huynh BL, Roberts PA, Bucksch A, Lynch JP. Genome-wide association mapping and agronomic impact of cowpea root architecture. Theor Appl Genet. 2017 Feb; 130(2):419-431.
Score: 0.502
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Gao Y, Lynch JP. Reduced crown root number improves water acquisition under water deficit stress in maize (Zea mays L.). J Exp Bot. 2016 08; 67(15):4545-57.
Score: 0.490
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York LM, Silberbush M, Lynch JP. Spatiotemporal variation of nitrate uptake kinetics within the maize (Zea mays L.) root system is associated with greater nitrate uptake and interactions with architectural phenes. J Exp Bot. 2016 06; 67(12):3763-75.
Score: 0.481
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Zhan A, Schneider H, Lynch JP. Reduced Lateral Root Branching Density Improves Drought Tolerance in Maize. Plant Physiol. 2015 Aug; 168(4):1603-15.
Score: 0.455
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York LM, Lynch JP. Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition. J Exp Bot. 2015 Sep; 66(18):5493-505.
Score: 0.454
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Chimungu JG, Loades KW, Lynch JP. Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). J Exp Bot. 2015 Jun; 66(11):3151-62.
Score: 0.450
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York LM, Galindo-Casta?eda T, Schussler JR, Lynch JP. Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress. J Exp Bot. 2015 Apr; 66(8):2347-58.
Score: 0.447
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Lynch JP, Wojciechowski T. Opportunities and challenges in the subsoil: pathways to deeper rooted crops. J Exp Bot. 2015 Apr; 66(8):2199-210.
Score: 0.442
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Lynch JP. Root phenes that reduce the metabolic costs of soil exploration: opportunities for 21st century agriculture. Plant Cell Environ. 2015 Sep; 38(9):1775-84.
Score: 0.437
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Chimungu JG, Brown KM, Lynch JP. Reduced root cortical cell file number improves drought tolerance in maize. Plant Physiol. 2014 Dec; 166(4):1943-55.
Score: 0.435
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Chimungu JG, Brown KM, Lynch JP. Large root cortical cell size improves drought tolerance in maize. Plant Physiol. 2014 Dec; 166(4):2166-78.
Score: 0.434
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Zhang C, Postma JA, York LM, Lynch JP. Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture. Ann Bot. 2014 Dec; 114(8):1719-33.
Score: 0.433
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Burton AL, Johnson JM, Foerster JM, Hirsch CN, Buell CR, Hanlon MT, Kaeppler SM, Brown KM, Lynch JP. QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.). Theor Appl Genet. 2014 Nov; 127(11):2293-311.
Score: 0.432
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Bucksch A, Burridge J, York LM, Das A, Nord E, Weitz JS, Lynch JP. Image-based high-throughput field phenotyping of crop roots. Plant Physiol. 2014 Oct; 166(2):470-86.
Score: 0.431
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Lynch JP, Chimungu JG, Brown KM. Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement. J Exp Bot. 2014 Nov; 65(21):6155-66.
Score: 0.420
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Hu B, Henry A, Brown KM, Lynch JP. Root cortical aerenchyma inhibits radial nutrient transport in maize (Zea mays). Ann Bot. 2014 Jan; 113(1):181-9.
Score: 0.408
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Jaramillo RE, Nord EA, Chimungu JG, Brown KM, Lynch JP. Root cortical burden influences drought tolerance in maize. Ann Bot. 2013 Jul; 112(2):429-37.
Score: 0.392
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Lynch JP. Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems. Ann Bot. 2013 Jul; 112(2):347-57.
Score: 0.385
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Lynch JP, Brown KM. New roots for agriculture: exploiting the root phenome. Philos Trans R Soc Lond B Biol Sci. 2012 Jun 05; 367(1595):1598-604.
Score: 0.369
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Postma JA, Lynch JP. Complementarity in root architecture for nutrient uptake in ancient maize/bean and maize/bean/squash polycultures. Ann Bot. 2012 Jul; 110(2):521-34.
Score: 0.365
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Lynch JP. Root phenes for enhanced soil exploration and phosphorus acquisition: tools for future crops. Plant Physiol. 2011 Jul; 156(3):1041-9.
Score: 0.343
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Postma JA, Lynch JP. Theoretical evidence for the functional benefit of root cortical aerenchyma in soils with low phosphorus availability. Ann Bot. 2011 Apr; 107(5):829-41.
Score: 0.330
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Zhu J, Brown KM, Lynch JP. Root cortical aerenchyma improves the drought tolerance of maize (Zea mays L.). Plant Cell Environ. 2010 May; 33(5):740-9.
Score: 0.319
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Zhu J, Kaeppler SM, Lynch JP. Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply. Theor Appl Genet. 2005 Aug; 111(4):688-95.
Score: 0.229
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He Z, Ma Z, Brown KM, Lynch JP. Assessment of inequality of root hair density in Arabidopsis thaliana using the Gini coefficient: a close look at the effect of phosphorus and its interaction with ethylene. Ann Bot. 2005 Jan; 95(2):287-93.
Score: 0.218
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Walk TC, Van Erp E, Lynch JP. Modelling applicability of fractal analysis to efficiency of soil exploration by roots. Ann Bot. 2004 Jul; 94(1):119-28.
Score: 0.211
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Ho MD, McCannon BC, Lynch JP. Optimization modeling of plant root architecture for water and phosphorus acquisition. J Theor Biol. 2004 Feb 07; 226(3):331-40.
Score: 0.207
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Halperin SJ, Lynch JP. Effects of salinity on cytosolic Na+ and K+ in root hairs of Arabidopsis thaliana: in vivo measurements using the fluorescent dyes SBFI and PBFI. J Exp Bot. 2003 Sep; 54(390):2035-43.
Score: 0.201
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Halperin SJ, Gilroy S, Lynch JP. Sodium chloride reduces growth and cytosolic calcium, but does not affect cytosolic pH, in root hairs of Arabidopsis thaliana L. J Exp Bot. 2003 Apr; 54(385):1269-80.
Score: 0.195
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Schneider HM, Lor VS, Zhang X, Saengwilai P, Hanlon MT, Klein SP, Davis JL, Borkar AN, Depew CL, Bennett MJ, Kaeppler SM, Brown KM, Bhosale R, Lynch JP. Transcription factor bHLH121 regulates root cortical aerenchyma formation in maize. Proc Natl Acad Sci U S A. 2023 03 21; 120(12):e2219668120.
Score: 0.195
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Ma Z, Baskin TI, Brown KM, Lynch JP. Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness. Plant Physiol. 2003 Mar; 131(3):1381-90.
Score: 0.194
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Sch?fer ED, Owen MR, Band LR, Farcot E, Bennett MJ, Lynch JP. Modeling root loss reveals impacts on nutrient uptake and crop development. Plant Physiol. 2022 Nov 28; 190(4):2260-2278.
Score: 0.191
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Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem JK, Borkar AN, Lombardi M, Forestan C, Milner SG, Davis JL, Lale A, Kirschner GK, Swarup R, Tassinari A, Pandey BK, York LM, Atkinson BS, Sturrock CJ, Mooney SJ, Hochholdinger F, Tucker MR, Himmelbach A, Stein N, Mascher M, Nagel KA, De Gara L, Simmonds J, Uauy C, Tuberosa R, Lynch JP, Yakubov GE, Bennett MJ, Bhosale R, Salvi S. Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism. Proc Natl Acad Sci U S A. 2022 08 02; 119(31):e2201350119.
Score: 0.186
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Ajmera I, Henry A, Radanielson AM, Klein SP, Ianevski A, Bennett MJ, Band LR, Lynch JP. Integrated root phenotypes for improved rice performance under low nitrogen availability. Plant Cell Environ. 2022 03; 45(3):805-822.
Score: 0.181
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Strock CF, Rangarajan H, Black CK, Sch?fer ED, Lynch JP. Theoretical evidence that root penetration ability interacts with soil compaction regimes to affect nitrate capture. Ann Bot. 2022 02 11; 129(3):315-330.
Score: 0.180
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Saengwilai P, Strock C, Rangarajan H, Chimungu J, Salungyu J, Lynch JP. Root hair phenotypes influence nitrogen acquisition in maize. Ann Bot. 2021 11 09; 128(7):849-858.
Score: 0.177
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Liu S, Barrow CS, Hanlon M, Lynch JP, Bucksch A. DIRT/3D: 3D root phenotyping for field-grown maize (Zea mays). Plant Physiol. 2021 10 05; 187(2):739-757.
Score: 0.176
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Vanhees DJ, Schneider HM, Sidhu JS, Loades KW, Bengough AG, Bennett MJ, Pandey BK, Brown KM, Mooney SJ, Lynch JP. Soil penetration by maize roots is negatively related to ethylene-induced thickening. Plant Cell Environ. 2022 03; 45(3):789-804.
Score: 0.175
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Perkins AC, Lynch JP. Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings. Ann Bot. 2021 09 03; 128(4):453-468.
Score: 0.175
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Schneider HM, Lor VSN, Hanlon MT, Perkins A, Kaeppler SM, Borkar AN, Bhosale R, Zhang X, Rodriguez J, Bucksch A, Bennett MJ, Brown KM, Lynch JP. Root angle in maize influences nitrogen capture and is regulated by calcineurin B-like protein (CBL)-interacting serine/threonine-protein kinase 15 (ZmCIPK15). Plant Cell Environ. 2022 03; 45(3):837-853.
Score: 0.173
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Pandey BK, Huang G, Bhosale R, Hartman S, Sturrock CJ, Jose L, Martin OC, Karady M, Voesenek LACJ, Ljung K, Lynch JP, Brown KM, Whalley WR, Mooney SJ, Zhang D, Bennett MJ. Plant roots sense soil compaction through restricted ethylene diffusion. Science. 2021 01 15; 371(6526):276-280.
Score: 0.167
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Oyiga BC, Palczak J, Wojciechowski T, Lynch JP, Naz AA, L?on J, Ballvora A. Genetic components of root architecture and anatomy adjustments to water-deficit stress in spring barley. Plant Cell Environ. 2020 03; 43(3):692-711.
Score: 0.156
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Orman-Ligeza B, Morris EC, Parizot B, Lavigne T, Bab? A, Ligeza A, Klein S, Sturrock C, Xuan W, Nov?k O, Ljung K, Fernandez MA, Rodriguez PL, Dodd IC, De Smet I, Chaumont F, Batoko H, P?rilleux C, Lynch JP, Bennett MJ, Beeckman T, Draye X. The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water. Curr Biol. 2018 10 08; 28(19):3165-3173.e5.
Score: 0.143
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Rangarajan H, Postma JA, Lynch JP. Co-optimization of axial root phenotypes for nitrogen and phosphorus acquisition in common bean. Ann Bot. 2018 08 27; 122(3):485-499.
Score: 0.142
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Schneider HM, Wojciechowski T, Postma JA, Brown KM, Lynch JP. Ethylene modulates root cortical senescence in barley. Ann Bot. 2018 06 28; 122(1):95-105.
Score: 0.140
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Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ. Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nat Commun. 2018 04 12; 9(1):1408.
Score: 0.138
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Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Vo? U, Alonso J, Stepanova A, Yun J, Ljung K, Brown KM, Lynch JP, Dolan L, Vernoux T, Bishopp A, Wells D, von Wir?n N, Bennett MJ, Swarup R. A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nat Commun. 2018 04 12; 9(1):1409.
Score: 0.138
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Morris EC, Griffiths M, Golebiowska A, Mairhofer S, Burr-Hersey J, Goh T, von Wangenheim D, Atkinson B, Sturrock CJ, Lynch JP, Vissenberg K, Ritz K, Wells DM, Mooney SJ, Bennett MJ. Shaping 3D Root System Architecture. Curr Biol. 2017 Sep 11; 27(17):R919-R930.
Score: 0.133
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Postma JA, Kuppe C, Owen MR, Mellor N, Griffiths M, Bennett MJ, Lynch JP, Watt M. OpenSimRoot: widening the scope and application of root architectural models. New Phytol. 2017 Aug; 215(3):1274-1286.
Score: 0.131
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Zhan A, Lynch JP. Reduced frequency of lateral root branching improves N capture from low-N soils in maize. J Exp Bot. 2015 Apr; 66(7):2055-65.
Score: 0.111
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Burton AL, Johnson J, Foerster J, Hanlon MT, Kaeppler SM, Lynch JP, Brown KM. QTL mapping and phenotypic variation of root anatomical traits in maize (Zea mays L.). Theor Appl Genet. 2015 Jan; 128(1):93-106.
Score: 0.109
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De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F, Draye X, Zhang H, Broadley MR, P?ret B, Hammond JP, Fukaki H, Mooney S, Lynch JP, Nacry P, Schurr U, Laplaze L, Benfey P, Beeckman T, Bennett M. Analyzing lateral root development: how to move forward. Plant Cell. 2012 Jan; 24(1):15-20.
Score: 0.090
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Nord EA, Shea K, Lynch JP. Optimizing reproductive phenology in a two-resource world: a dynamic allocation model of plant growth predicts later reproduction in phosphorus-limited plants. Ann Bot. 2011 Aug; 108(2):391-404.
Score: 0.086
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Kim HJ, Lynch JP, Brown KM. Ethylene insensitivity impedes a subset of responses to phosphorus deficiency in tomato and petunia. Plant Cell Environ. 2008 Dec; 31(12):1744-55.
Score: 0.071
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Nord EA, Lynch JP. Delayed reproduction in Arabidopsis thaliana improves fitness in soil with suboptimal phosphorus availability. Plant Cell Environ. 2008 Oct; 31(10):1432-41.
Score: 0.070
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Basu P, Pal A, Lynch JP, Brown KM. A novel image-analysis technique for kinematic study of growth and curvature. Plant Physiol. 2007 Oct; 145(2):305-16.
Score: 0.066
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Zhu J, Mickelson SM, Kaeppler SM, Lynch JP. Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels. Theor Appl Genet. 2006 Jun; 113(1):1-10.
Score: 0.060
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Rubio G, Sorgon? A, Lynch JP. Spatial mapping of phosphorus influx in bean root systems using digital autoradiography. J Exp Bot. 2004 Oct; 55(406):2269-80.
Score: 0.054
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Zhang YJ, Lynch JP, Brown KM. Ethylene and phosphorus availability have interacting yet distinct effects on root hair development. J Exp Bot. 2003 Oct; 54(391):2351-61.
Score: 0.050
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Cl?ment C, Schneider HM, Dresb?ll DB, Lynch JP, Thorup-Kristensen K. Root and xylem anatomy varies with root length, root order, soil depth and environment in intermediate wheatgrass (Kernza?) and alfalfa. Ann Bot. 2022 09 19; 130(3):367-382.
Score: 0.047
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Levin KA, Tucker MR, Strock CF, Lynch JP, Mather DE. Three-dimensional imaging reveals that positions of cyst nematode feeding sites relative to xylem vessels differ between susceptible and resistant wheat. Plant Cell Rep. 2021 Feb; 40(2):393-403.
Score: 0.042
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Benes B, Guan K, Lang M, Long SP, Lynch JP, Marshall-Col?n A, Peng B, Schnable J, Sweetlove LJ, Turk MJ. Multiscale computational models can guide experimentation and targeted measurements for crop improvement. Plant J. 2020 07; 103(1):21-31.
Score: 0.040
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Tomscha JL, Trull MC, Deikman J, Lynch JP, Guiltinan MJ. Phosphatase under-producer mutants have altered phosphorus relations. Plant Physiol. 2004 May; 135(1):334-45.
Score: 0.013