Scott Kelley to Phylogeny
This is a "connection" page, showing publications Scott Kelley has written about Phylogeny.
Connection Strength
2.891
-
Fouquier J, Rideout JR, Bolyen E, Chase J, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. Microbiome. 2016 Feb 24; 4:11.
Score: 0.444
-
Schwarzberg K, Le R, Bharti B, Lindsay S, Casaburi G, Salvatore F, Saber MH, Alonaizan F, Slots J, Gottlieb RA, Caporaso JG, Kelley ST. The personal human oral microbiome obscures the effects of treatment on periodontal disease. PLoS One. 2014; 9(1):e86708.
Score: 0.385
-
Caporaso JG, Knight R, Kelley ST. Host-associated and free-living phage communities differ profoundly in phylogenetic composition. PLoS One. 2011 Feb 24; 6(2):e16900.
Score: 0.314
-
Nguyen TX, Alegre ER, Kelley ST. Phylogenetic analysis of general bacterial porins: a phylogenomic case study. J Mol Microbiol Biotechnol. 2006; 11(6):291-301.
Score: 0.220
-
Ortiz-Velez AN, Sukumaran J, Rouzbehani R, Kelley ST. AutoPhy: Automated phylogenetic identification of novel protein subfamilies. PLoS One. 2024; 19(1):e0291801.
Score: 0.192
-
Xu Y, Tandon R, Ancheta C, Arroyo P, Gilbert JA, Stephens B, Kelley ST. Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. 2021 01; 31(1):188-205.
Score: 0.152
-
Torres PJ, Thompson J, McLean JS, Kelley ST, Edlund A. Discovery of a Novel Periodontal Disease-Associated Bacterium. Microb Ecol. 2019 Jan; 77(1):267-276.
Score: 0.130
-
Sherman MP, Minnerly J, Curtiss W, Rangwala S, Kelley ST. Research on neonatal microbiomes: what neonatologists need to know. Neonatology. 2014; 105(1):14-24.
Score: 0.095
-
Benson CA, Bizzoco RW, Lipson DA, Kelley ST. Microbial diversity in nonsulfur, sulfur and iron geothermal steam vents. FEMS Microbiol Ecol. 2011 Apr; 76(1):74-88.
Score: 0.078
-
Kelley ST, Dobler S. Comparative analysis of microbial diversity in Longitarsus flea beetles (Coleoptera: Chrysomelidae). Genetica. 2011 May; 139(5):541-50.
Score: 0.076
-
Ellis DG, Bizzoco RW, Kelley ST. Halophilic Archaea determined from geothermal steam vent aerosols. Environ Microbiol. 2008 Jun; 10(6):1582-90.
Score: 0.064
-
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res. 2008 Apr; 36(7):2230-9.
Score: 0.064
-
Townsend TM, Alegre RE, Kelley ST, Wiens JJ, Reeder TW. Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles. Mol Phylogenet Evol. 2008 Apr; 47(1):129-42.
Score: 0.063
-
Lee L, Tin S, Kelley ST. Culture-independent analysis of bacterial diversity in a child-care facility. BMC Microbiol. 2007 Apr 05; 7:27.
Score: 0.060
-
Mathur J, Bizzoco RW, Ellis DG, Lipson DA, Poole AW, Levine R, Kelley ST. Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs. Appl Environ Microbiol. 2007 Apr; 73(8):2612-23.
Score: 0.059
-
Lozupone CA, Hamady M, Kelley ST, Knight R. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol. 2007 Mar; 73(5):1576-85.
Score: 0.059
-
Safaee S, Weiser GC, Cassirer EF, Ramey RR, Kelley ST. Microbial diversity in bighorn sheep revealed by culture-independent methods. J Wildl Dis. 2006 Jul; 42(3):545-55.
Score: 0.057
-
Kelley ST, Cassirer EF, Weiser GC, Safaee S. Phylogenetic diversity of Pasteurellaceae and horizontal gene transfer of leukotoxin in wild and domestic sheep. Infect Genet Evol. 2007 Jan; 7(1):13-23.
Score: 0.056
-
Kelley ST, Theisen U, Angenent LT, St Amand A, Pace NR. Molecular analysis of shower curtain biofilm microbes. Appl Environ Microbiol. 2004 Jul; 70(7):4187-92.
Score: 0.050
-
Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Diversity and population structure of a near-shore marine-sediment viral community. Proc Biol Sci. 2004 Mar 22; 271(1539):565-74.
Score: 0.049
-
Harris JK, Kelley ST, Pace NR. New perspective on uncultured bacterial phylogenetic division OP11. Appl Environ Microbiol. 2004 Feb; 70(2):845-9.
Score: 0.048
-
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, D?az Mu?oz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Mu?oz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cort?s P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hy?ty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ram?rez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol. 2019 10; 4(10):1727-1736.
Score: 0.035
-
Lax S, Cardona C, Zhao D, Winton VJ, Goodney G, Gao P, Gottel N, Hartmann EM, Henry C, Thomas PM, Kelley ST, Stephens B, Gilbert JA. Microbial and metabolic succession on common building materials under high humidity conditions. Nat Commun. 2019 04 16; 10(1):1767.
Score: 0.035
-
Prussin AJ, Torres PJ, Shimashita J, Head SR, Bibby KJ, Kelley ST, Marr LC. Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center. Microbiome. 2019 04 01; 7(1):53.
Score: 0.034
-
Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 2008 Mar 20; 452(7185):340-3.
Score: 0.016
-
Thackray LB, Wobus CE, Chachu KA, Liu B, Alegre ER, Henderson KS, Kelley ST, Virgin HW. Murine noroviruses comprising a single genogroup exhibit biological diversity despite limited sequence divergence. J Virol. 2007 Oct; 81(19):10460-73.
Score: 0.015
-
Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F. The marine viromes of four oceanic regions. PLoS Biol. 2006 Nov; 4(11):e368.
Score: 0.015
-
Marquez SM, Harris JK, Kelley ST, Brown JW, Dawson SC, Roberts EC, Pace NR. Structural implications of novel diversity in eucaryal RNase P RNA. RNA. 2005 May; 11(5):739-51.
Score: 0.013
-
Angenent LT, Kelley ST, St Amand A, Pace NR, Hernandez MT. Molecular identification of potential pathogens in water and air of a hospital therapy pool. Proc Natl Acad Sci U S A. 2005 Mar 29; 102(13):4860-5.
Score: 0.013