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Connection

Scott Kelley to Humans

This is a "connection" page, showing publications Scott Kelley has written about Humans.
Connection Strength

0.880
  1. Krutkin DD, Thomas S, Zuffa S, Rajkumar P, Knight R, Dorrestein PC, Kelley ST. To Impute or Not To Impute in Untargeted Metabolomics-That is the Compositional Question. J Am Soc Mass Spectrom. 2025 Apr 02; 36(4):742-759.
    View in: PubMed
    Score: 0.041
  2. Mirande MD, McKenna NP, Sample JW, Bews KA, Brady JT, Colibaseanu DT, Kelley SR. Surgical site infections at prior stoma site after colostomy closure: a multi-institutional analysis. J Gastrointest Surg. 2024 Jun; 28(6):936-938.
    View in: PubMed
    Score: 0.039
  3. Shahar S, Sant KE, Allsing N, Kelley ST. Metagenomic analysis of microbial communities and antibiotic resistant genes in the Tijuana river, and potential sources. Environ Pollut. 2024 Feb 01; 342:123067.
    View in: PubMed
    Score: 0.038
  4. Mirande MD, McKenna NP, Bews KA, Shawki SF, Cima RR, Brady JT, Colibaseanu DT, Mathis KL, Kelley SR. Risk factors for surgical site infections and trends in skin closure technique after diverting loop ileostomy reversal: A multi-institutional analysis. Am J Surg. 2023 11; 226(5):703-708.
    View in: PubMed
    Score: 0.037
  5. Liu S, Mathis KL, Graham RP, Kelley SR. Perianal Basal Cell Carcinoma: 35-Year Experience. Dis Colon Rectum. 2023 02 01; 66(2):217-220.
    View in: PubMed
    Score: 0.035
  6. Bendik J, Kalia R, Sukumaran J, Richardot WH, Hoh E, Kelley ST. Automated high confidence compound identification of electron ionization mass spectra for nontargeted analysis. J Chromatogr A. 2021 Dec 20; 1660:462656.
    View in: PubMed
    Score: 0.033
  7. D'Angelo AD, D'Angelo JD, Beaty JS, Cleary RK, Hoedema RE, Mathis KL, Dozois EJ, Kelley SR. Virtual interviews - Utilizing technological affordances as a predictor of applicant confidence. Am J Surg. 2021 Dec; 222(6):1085-1092.
    View in: PubMed
    Score: 0.033
  8. Perry WRG, Abd El Aziz MA, Duchalais E, Grass F, Behm KT, Mathis KL, Kelley SR. Sexual dysfunction following surgery for rectal cancer: a single-institution experience. Updates Surg. 2021 Dec; 73(6):2155-2159.
    View in: PubMed
    Score: 0.032
  9. Kelley ST, Liu W, Quintana PJE, Hoh E, Dodder NG, Mahabee-Gittens EM, Padilla S, Ogden S, Frenzel S, Sisk-Hackworth L, Matt GE. Altered microbiomes in thirdhand smoke-exposed children and their home environments. Pediatr Res. 2021 12; 90(6):1153-1160.
    View in: PubMed
    Score: 0.031
  10. Xu Y, Tandon R, Ancheta C, Arroyo P, Gilbert JA, Stephens B, Kelley ST. Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. 2021 01; 31(1):188-205.
    View in: PubMed
    Score: 0.030
  11. Kosnicki KL, Penprase JC, Cintora P, Torres PJ, Harris GL, Brasser SM, Kelley ST. Effects of moderate, voluntary ethanol consumption on the rat and human gut microbiome. Addict Biol. 2019 07; 24(4):617-630.
    View in: PubMed
    Score: 0.026
  12. Torres PJ, Kelley ST. Sampling, Extraction, and High-Throughput Sequencing Methods for Environmental Microbial and Viral Communities. Methods Mol Biol. 2018; 1712:163-173.
    View in: PubMed
    Score: 0.025
  13. Fouquier J, Rideout JR, Bolyen E, Chase J, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. Microbiome. 2016 Feb 24; 4:11.
    View in: PubMed
    Score: 0.022
  14. Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Environ Microbiol. 2015 Jan; 81(2):765-73.
    View in: PubMed
    Score: 0.020
  15. Schwarzberg K, Le R, Bharti B, Lindsay S, Casaburi G, Salvatore F, Saber MH, Alonaizan F, Slots J, Gottlieb RA, Caporaso JG, Kelley ST. The personal human oral microbiome obscures the effects of treatment on periodontal disease. PLoS One. 2014; 9(1):e86708.
    View in: PubMed
    Score: 0.019
  16. Sherman MP, Minnerly J, Curtiss W, Rangwala S, Kelley ST. Research on neonatal microbiomes: what neonatologists need to know. Neonatology. 2014; 105(1):14-24.
    View in: PubMed
    Score: 0.019
  17. Hewitt KM, Mannino FL, Gonzalez A, Chase JH, Caporaso JG, Knight R, Kelley ST. Bacterial diversity in two Neonatal Intensive Care Units (NICUs). PLoS One. 2013; 8(1):e54703.
    View in: PubMed
    Score: 0.018
  18. Hewitt KM, Gerba CP, Maxwell SL, Kelley ST. Office space bacterial abundance and diversity in three metropolitan areas. PLoS One. 2012; 7(5):e37849.
    View in: PubMed
    Score: 0.017
  19. Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG, Bushman FD, Knight R, Kelley ST. Bayesian community-wide culture-independent microbial source tracking. Nat Methods. 2011 Jul 17; 8(9):761-3.
    View in: PubMed
    Score: 0.016
  20. Caporaso JG, Knight R, Kelley ST. Host-associated and free-living phage communities differ profoundly in phylogenetic composition. PLoS One. 2011 Feb 24; 6(2):e16900.
    View in: PubMed
    Score: 0.016
  21. Lee L, Tin S, Kelley ST. Culture-independent analysis of bacterial diversity in a child-care facility. BMC Microbiol. 2007 Apr 05; 7:27.
    View in: PubMed
    Score: 0.012
  22. Myers T, Song SJ, Chen Y, De Pessemier B, Khatib L, McDonald D, Huang S, Gallo R, Callewaert C, Havulinna AS, Lahti L, Roeselers G, Laiola M, Shetty SA, Kelley ST, Knight R, Bartko A. Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis. Commun Biol. 2025 Aug 06; 8(1):1159.
    View in: PubMed
    Score: 0.011
  23. Brady JT, Wright JP, Davids JS, Kelley SR, Alavi K, Stein SL, Monson JRT, Xu Z. The impact of nonoperative management of rectal cancer on colon and rectal surgery residents in the United States. Colorectal Dis. 2025 May; 27(5):e70125.
    View in: PubMed
    Score: 0.010
  24. Jensen JL, Bohonak AJ, Kelley ST. Isolation by distance, web service. BMC Genet. 2005 Mar 11; 6:13.
    View in: PubMed
    Score: 0.010
  25. Terrazas F, Kelley ST, DeMasi T, Giltvedt K, Tsang M, Nannini K, Kern M, Hooshmand S. Influence of menstrual cycle and oral contraception on taxonomic composition and gas production in the gut microbiome. J Med Microbiol. 2025 Mar; 74(3).
    View in: PubMed
    Score: 0.010
  26. Violante T, Behm KT, Shawki SF, Ferrari D, D'Angelo AD, Kelley SR, Nitin M, Larson DW. Robotic-assisted reoperative ileal pouch-anal anastomosis: robotic pouch excision and pouch revision. Tech Coloproctol. 2024 04 01; 28(1):43.
    View in: PubMed
    Score: 0.010
  27. Violante T, Ferrari D, Gomaa IA, Rumer KK, D'Angelo AD, Behm KT, Shawki SF, Perry WRG, Kelley SR, Mathis KL, Dozois EJ, Cima RR, Larson DW. Evolution of laparoscopic ileal pouch-anal anastomosis: impact of enhanced recovery program, medication changes, and staged approaches on outcomes. J Gastrointest Surg. 2024 Apr; 28(4):501-506.
    View in: PubMed
    Score: 0.010
  28. Sisk-Hackworth L, Brown J, Sau L, Levine AA, Tam LYI, Ramesh A, Shah RS, Kelley-Thackray ET, Wang S, Nguyen A, Kelley ST, Thackray VG. Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities. Biol Sex Differ. 2023 11 06; 14(1):79.
    View in: PubMed
    Score: 0.009
  29. Chen A, Handzel A, Sau L, Cui L, Kelley ST, Thackray VG. Metabolic dysregulation and gut dysbiosis linked to hyperandrogenism in female mice. Endocrinol Diabetes Metab. 2024 Jan; 7(1):e443.
    View in: PubMed
    Score: 0.009
  30. D'Angelo AD, Kapur N, Kelley SR, Rivera M, Busch RA, Tevis SE, Hoedema RE, D'Angelo JD. The good, the bad, and the ugly: Operative staff perspectives of surgeon coping with intraoperative errors. Surgery. 2023 08; 174(2):222-228.
    View in: PubMed
    Score: 0.009
  31. Zhang C, Calderon E, Chang YH, Han GR, Kelley SR, Merchea A, Brady JT, Young-Fadok TM, Etzioni DA, Mishra N. Short and long-term oncologic outcomes of patients with colon cancer of the splenic flexure. Am J Surg. 2023 07; 226(1):77-82.
    View in: PubMed
    Score: 0.009
  32. Sisk-Hackworth L, Kelley ST, Thackray VG. Sex, puberty, and the gut microbiome. Reproduction. 2023 02 01; 165(2):R61-R74.
    View in: PubMed
    Score: 0.009
  33. Liu S, Contreras N, Krezalek MA, Abd El Aziz MA, Merchea A, Kelley SR, Behm K. Robotic transanal minimally invasive surgery: a single institutional experience. Updates Surg. 2022 Jun; 74(3):1011-1016.
    View in: PubMed
    Score: 0.008
  34. Ansell J, Perry WRG, Mathis KL, Grass F, Yonkus JA, Hallemeier CL, Haddock MG, Graham RP, Merchea A, Colibaseanu DT, Mishra N, Kelley SR, Larson DW, Dozois EJ. Re-resection of Microscopically Positive Margins Found on Intraoperative Frozen Section Analysis Does Not Result in a Survival Benefit in Patients Undergoing Surgery and Intraoperative Radiation Therapy for Locally Recurrent Rectal Cancer. Dis Colon Rectum. 2022 09 01; 65(9):1094-1102.
    View in: PubMed
    Score: 0.008
  35. Abd El Aziz MA, McKenna NP, Jakub JW, Hallemeier CL, Kelley SR, Jin Z, Mathis KL. Rectal cancer with synchronous inguinal lymph node metastasis without distant metastasis. A call for further oncological evaluation. Eur J Surg Oncol. 2022 05; 48(5):1100-1103.
    View in: PubMed
    Score: 0.008
  36. Abd El Aziz MA, Grass F, Calini G, Behm KT, D'Angelo AL, Kelley SR, Mathis KL, Larson DW. Oral Antibiotics Bowel Preparation Without Mechanical Preparation for Minimally Invasive Colorectal Surgeries: Current Practice and Future Prospects. Dis Colon Rectum. 2022 09 01; 65(9):e897-e906.
    View in: PubMed
    Score: 0.008
  37. Yanagihara R, Berry MJ, Carson MJ, Chang SP, Corliss H, Cox MB, Haddad G, Hohmann C, Kelley ST, Lee ESY, Link BG, Noel RJ, Pickrel J, Porter JT, Quirk GJ, Samuel T, Stiles JK, Sy AU, Taira DA, Trepka MJ, Villalta F, Wiese TE. Building a Diverse Workforce and Thinkforce to Reduce Health Disparities. Int J Environ Res Public Health. 2021 02 07; 18(4).
    View in: PubMed
    Score: 0.008
  38. Osagiede O, Haehn DA, Spaulding AC, Otto N, Cochuyt JJ, Lemini R, Merchea A, Kelley S, Colibaseanu DT. Influence of surgeon specialty and volume on the utilization of minimally invasive surgery and outcomes for colorectal cancer: a retrospective review. Surg Endosc. 2021 10; 35(10):5480-5488.
    View in: PubMed
    Score: 0.008
  39. Law KE, Lowndes BR, Kelley SR, Blocker RC, Larson DW, Hallbeck MS, Nelson H. NASA-Task Load Index Differentiates Surgical Approach: Opportunities for Improvement in Colon and Rectal Surgery. Ann Surg. 2020 05; 271(5):906-912.
    View in: PubMed
    Score: 0.007
  40. Grass F, H?bner M, Mathis KL, Hahnloser D, Dozois EJ, Kelley SR, Demartines N, Larson DW. Challenges to accomplish stringent fluid management standards 7 years after enhanced recovery after surgery implementation-The surgeon's perspective. Surgery. 2020 Aug; 168(2):313-319.
    View in: PubMed
    Score: 0.007
  41. Prussin AJ, Belser JA, Bischoff W, Kelley ST, Lin K, Lindsley WG, Nshimyimana JP, Schuit M, Wu Z, Bibby K, Marr LC. Viruses in the Built Environment (VIBE) meeting report. Microbiome. 2020 01 04; 8(1):1.
    View in: PubMed
    Score: 0.007
  42. Arroyo P, Ho BS, Sau L, Kelley ST, Thackray VG. Letrozole treatment of pubertal female mice results in activational effects on reproduction, metabolism and the gut microbiome. PLoS One. 2019; 14(9):e0223274.
    View in: PubMed
    Score: 0.007
  43. Law KE, Lowndes BR, Kelley SR, Blocker RC, Larson DW, Hallbeck MS, Nelson H. Surgeon Workload in Colorectal Surgery: Perceived Drivers of Procedural Difficulty. J Surg Res. 2020 01; 245:57-63.
    View in: PubMed
    Score: 0.007
  44. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodr?guez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, V?zquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857.
    View in: PubMed
    Score: 0.007
  45. Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, D?az Mu?oz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Mu?oz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cort?s P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hy?ty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ram?rez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol. 2019 10; 4(10):1727-1736.
    View in: PubMed
    Score: 0.007
  46. Shariq OA, Hanson KT, McKenna NP, Kelley SR, Dozois EJ, Lightner AL, Mathis KL, Habermann EB. Does Metabolic Syndrome Increase the Risk of Postoperative Complications in Patients Undergoing Colorectal Cancer Surgery? Dis Colon Rectum. 2019 07; 62(7):849-858.
    View in: PubMed
    Score: 0.007
  47. Torres PJ, Ho BS, Arroyo P, Sau L, Chen A, Kelley ST, Thackray VG. Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model. Endocrinology. 2019 05 01; 160(5):1193-1204.
    View in: PubMed
    Score: 0.007
  48. Prussin AJ, Torres PJ, Shimashita J, Head SR, Bibby KJ, Kelley ST, Marr LC. Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center. Microbiome. 2019 04 01; 7(1):53.
    View in: PubMed
    Score: 0.007
  49. Osagiede O, Spaulding AC, Frank RD, Merchea A, Uitti R, Ailawadhi S, Kelley S, Colibaseanu D. Predictors of palliative treatment in stage IV colorectal cancer. Am J Surg. 2019 09; 218(3):514-520.
    View in: PubMed
    Score: 0.007
  50. Russell SJ, Sala R, Conaghan PG, Habib G, Vo Q, Manning R, Kivitz A, Davis Y, Lufkin J, Johnson JR, Kelley S, Bodick N. Triamcinolone acetonide extended-release in patients with osteoarthritis and type 2 diabetes: a randomized, phase 2 study. Rheumatology (Oxford). 2018 12 01; 57(12):2235-2241.
    View in: PubMed
    Score: 0.007
  51. Danelich IM, Bergquist JR, Bergquist WJ, Osborn JL, Wright SS, Tefft BJ, Sturm AW, Langworthy DR, Mandrekar J, Devine RM, Kelley SR, Mathis KL, Pemberton JH, Jacob AK, Larson DW. Early Diuresis After Colon and Rectal Surgery Does Not Reduce Length of Hospital Stay: Results of a Randomized Trial. Dis Colon Rectum. 2018 Oct; 61(10):1187-1195.
    View in: PubMed
    Score: 0.007
  52. Bhaskaran N, Luu J, Kelley ST, Khan MW, Mamindla P, McGuire KL. A new method for discovering EMAST sequences in animal models of cancer. Sci Rep. 2018 09 13; 8(1):13764.
    View in: PubMed
    Score: 0.007
  53. Torres PJ, Thompson J, McLean JS, Kelley ST, Edlund A. Discovery of a Novel Periodontal Disease-Associated Bacterium. Microb Ecol. 2019 Jan; 77(1):267-276.
    View in: PubMed
    Score: 0.007
  54. Osagiede O, Colibaseanu DT, Spaulding AC, Frank RD, Merchea A, Kelley SR, Uitti RJ, Ailawadhi S. Palliative Care Use Among Patients With Solid Cancer Tumors: A National Cancer Data Base Study. J Palliat Care. 2018 Jul; 33(3):149-158.
    View in: PubMed
    Score: 0.006
  55. Torres PJ, Siakowska M, Banaszewska B, Pawelczyk L, Duleba AJ, Kelley ST, Thackray VG. Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism. J Clin Endocrinol Metab. 2018 04 01; 103(4):1502-1511.
    View in: PubMed
    Score: 0.006
  56. Delange N, Lindsay S, Lemus H, Finlayson TL, Kelley ST, Gottlieb RA. Periodontal disease and its connection to systemic biomarkers of cardiovascular disease in young American Indian/Alaskan natives. J Periodontol. 2018 02; 89(2):219-227.
    View in: PubMed
    Score: 0.006
  57. Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J, White O. Advancing the microbiome research community. Cell. 2014 Oct 09; 159(2):227-30.
    View in: PubMed
    Score: 0.005
  58. Anthony EG, Richard E, Lipkowitz MS, Kelley ST, Alcaraz JE, Shaffer RA, Bhatnagar V. Association of phosphodiesterase 4 polymorphism (rs702553) with blood pressure in the African American Study of Kidney Disease and Hypertension Genomics Study. Pharmacogenet Genomics. 2013 Aug; 23(8):442-4.
    View in: PubMed
    Score: 0.005
  59. Saber MH, Schwarzberg K, Alonaizan FA, Kelley ST, Sedghizadeh PP, Furlan M, Levy TA, Simon JH, Slots J. Bacterial flora of dental periradicular lesions analyzed by the 454-pyrosequencing technology. J Endod. 2012 Nov; 38(11):1484-8.
    View in: PubMed
    Score: 0.004
  60. Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Meth? B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput Biol. 2012; 8(6):e1002358.
    View in: PubMed
    Score: 0.004
  61. Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Meth? BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Gl?ckner FO. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol. 2011 May; 29(5):415-20.
    View in: PubMed
    Score: 0.004
  62. Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biol. 2010; 11(5):210.
    View in: PubMed
    Score: 0.004
  63. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pe?a AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010 May; 7(5):335-6.
    View in: PubMed
    Score: 0.004
  64. Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F. Viral diversity and dynamics in an infant gut. Res Microbiol. 2008 Jun; 159(5):367-73.
    View in: PubMed
    Score: 0.003
  65. Townsend TM, Alegre RE, Kelley ST, Wiens JJ, Reeder TW. Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles. Mol Phylogenet Evol. 2008 Apr; 47(1):129-42.
    View in: PubMed
    Score: 0.003
  66. Crawford NP, Colliver DW, Funke AA, Young MN, Kelley S, Cobbs GA, Petras RE, Galandiuk S. Characterization of genotype-phenotype relationships and stratification by the CARD15 variant genotype for inflammatory bowel disease susceptibility loci using multiple short tandem repeat genetic markers. Hum Mutat. 2005 Feb; 25(2):156-66.
    View in: PubMed
    Score: 0.003
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