Qing Li to Gene Expression Profiling
This is a "connection" page, showing publications Qing Li has written about Gene Expression Profiling.
Connection Strength
2.861
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Hong L, Su W, Zhang Y, Ye C, Shen Y, Li QQ. Transcriptome profiling during mangrove viviparity in response to abscisic acid. Sci Rep. 2018 01 15; 8(1):770.
Score: 0.474
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Fu H, Yang D, Su W, Ma L, Shen Y, Ji G, Ye X, Wu X, Li QQ. Genome-wide dynamics of alternative polyadenylation in rice. Genome Res. 2016 12; 26(12):1753-1760.
Score: 0.434
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Zheng J, Xing D, Wu X, Shen Y, Kroll DM, Ji G, Li QQ. Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray. PLoS One. 2011 Feb 25; 6(2):e14719.
Score: 0.294
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Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. BMC Genomics. 2008 May 14; 9:220.
Score: 0.242
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Liang C, Liu Y, Liu L, Davis AC, Shen Y, Li QQ. Expressed sequence tags with cDNA termini: previously overlooked resources for gene annotation and transcriptome exploration in Chlamydomonas reinhardtii. Genetics. 2008 May; 179(1):83-93.
Score: 0.242
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Lin J, Ye C, Li QQ. QPAT-seq, a rapid and deduplicatable method for quantification of poly(A) site usages. Methods Enzymol. 2021; 655:73-83.
Score: 0.150
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Ye C, Zhou Q, Wu X, Yu C, Ji G, Saban DR, Li QQ. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinformatics. 2020 02 15; 36(4):1262-1264.
Score: 0.137
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Yu Z, Lin J, Li QQ. Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation. Plant Cell. 2019 10; 31(10):2332-2352.
Score: 0.132
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Su W, Ye C, Zhang Y, Hao S, Li QQ. Identification of putative key genes for coastal environments and cold adaptation in mangrove Kandelia obovata through transcriptome analysis. Sci Total Environ. 2019 Sep 01; 681:191-201.
Score: 0.130
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Lin J, Xu R, Wu X, Shen Y, Li QQ. Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination. Plant J. 2017 Sep; 91(5):829-839.
Score: 0.115
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Hennessee CT, Li QX. Effects of Polycyclic Aromatic Hydrocarbon Mixtures on Degradation, Gene Expression, and Metabolite Production in Four Mycobacterium Species. Appl Environ Microbiol. 2016 06 01; 82(11):3357-3369.
Score: 0.106
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Hunt AG, Xing D, Li QQ. Plant polyadenylation factors: conservation and variety in the polyadenylation complex in plants. BMC Genomics. 2012 Nov 20; 13:641.
Score: 0.083
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Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res. 2011 Sep; 21(9):1478-86.
Score: 0.076
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Yang X, Xuan Q, Mo L, Huang F, Pang Y, He M, Lin W, Li QQ, Mo Z. Differential expression of genes in co-cultured versus separately cultured fibroblasts and epithelial cells from human benign hyperplastic prostate tissues. Int J Mol Med. 2010 Jul; 26(1):17-25.
Score: 0.070
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Xu R, Zhao H, Dinkins RD, Cheng X, Carberry G, Li QQ. The 73 kD subunit of the cleavage and polyadenylation specificity factor (CPSF) complex affects reproductive development in Arabidopsis. Plant Mol Biol. 2006 Jul; 61(4-5):799-815.
Score: 0.053
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Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wie?ner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biol. 2022 07 07; 23(1):149.
Score: 0.040
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Irizarry KJL, Chan A, Kettle D, Kezian S, Ma D, Palacios L, Li QQ, Keeler CL, Drechsler Y. Bioinformatics Analysis of Chicken miRNAs Associated with Monocyte to Macrophage Differentiation and Subsequent IFN? Stimulated Activation. Microrna. 2017; 6(1):53-70.
Score: 0.028
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Ma L, Pati PK, Liu M, Li QQ, Hunt AG. High throughput characterizations of poly(A) site choice in plants. Methods. 2014 May 01; 67(1):74-83.
Score: 0.022
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Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A. 2011 Jul 26; 108(30):12533-8.
Score: 0.019
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Zhang J, Addepalli B, Yun KY, Hunt AG, Xu R, Rao S, Li QQ, Falcone DL. A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana. PLoS One. 2008 Jun 11; 3(6):e2410.
Score: 0.015