Jianhua Ruan to Promoter Regions, Genetic
This is a "connection" page, showing publications Jianhua Ruan has written about Promoter Regions, Genetic.
Connection Strength
0.920
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Ruan J, Perez J, Hernandez B, Lei C, Sunter G, Sponsel VM. Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana. BMC Bioinformatics. 2011 Nov 24; 12 Suppl 12:S2.
Score: 0.336
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Williams J, Regedanz E, Lucinda N, Nava Fereira AR, Lacatus G, Berger M, O'Connell N, Coursey T, Ruan J, Bisaro DM, Sunter G. Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin. PLoS Pathog. 2024 Jul; 20(7):e1012399.
Score: 0.202
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Gao Z, Zhao R, Ruan J. A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genomics. 2013; 14 Suppl 1:S4.
Score: 0.091
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Ruan J, Deng Y, Perkins EJ, Zhang W. An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data. BMC Genomics. 2009 Jul 07; 10 Suppl 1:S8.
Score: 0.071
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Lei C, Ruan J. A novel swarm intelligence algorithm for finding DNA motifs. Int J Comput Biol Drug Des. 2009; 2(4):323-39.
Score: 0.069
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Zhou X, Ruan J, Wang G, Zhang W. Characterization and identification of microRNA core promoters in four model species. PLoS Comput Biol. 2007 Mar 09; 3(3):e37.
Score: 0.060
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Ruan J, Zhang W. CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinformatics. 2005 May 12; 6:114.
Score: 0.053
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Hsu YT, Gu F, Huang YW, Liu J, Ruan J, Huang RL, Wang CM, Chen CL, Jadhav RR, Lai HC, Mutch DG, Goodfellow PJ, Thompson IM, Kirma NB, Huang TH. Promoter hypomethylation of EpCAM-regulated bone morphogenetic protein gene family in recurrent endometrial cancer. Clin Cancer Res. 2013 Nov 15; 19(22):6272-85.
Score: 0.024
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Zhang W, Ruan J, Ho TH, You Y, Yu T, Quatrano RS. Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinformatics. 2005 Jul 15; 21(14):3074-81.
Score: 0.013