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Jon Lynch

TitleResearcher
InstitutionUniversity of Hawaii
Department Pacific Biosciences Research Center
AddressUniversity of Hawaii at Manoa
1993 East West Road
Honolulu HI
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Saengwilai P, Strock C, Rangarajan H, Chimungu J, Salungyu J, Lynch JP. Root hair phenotypes influence nitrogen acquisition in maize. Ann Bot. 2021 Aug 06. PMID: 34355736.
      Citations:    Fields:    
    2. Lynch JP. Root biology in the 21st century: challenges and opportunities. Ann Bot. 2021 Jul 28; 128(1):i-ii. PMID: 34021304.
      Citations:    Fields:    
    3. Schneider HM, Lor VSN, Hanlon MT, Perkins A, Kaeppler SM, Borkar AN, Bhosale R, Zhang X, Rodriguez J, Bucksch A, Bennett MJ, Brown KM, Lynch JP. Root angle in maize influences nitrogen capture and is regulated by calcineurin B-like protein (CBL)-interacting serine/threonine-protein kinase 15 (ZmCIPK15). Plant Cell Environ. 2021 Jun 25. PMID: 34169548.
      Citations:    Fields:    
    4. Perkins AC, Lynch JP. Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings. Ann Bot. 2021 Jun 12. PMID: 34120166.
      Citations:    Fields:    
    5. Schneider HM, Yang JT, Brown KM, Lynch JP. Nodal root diameter and node number in maize (Zea mays L.) interact to influence plant growth under nitrogen stress. Plant Direct. 2021 Mar; 5(3):e00310. PMID: 33748655.
      Citations:    
    6. Jarquin D, de Leon N, Romay C, Bohn M, Buckler ES, Ciampitti I, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hooker D, Kaeppler SM, Knoll J, Lee EC, Lawrence-Dill CJ, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Schnable JC, Schnable PS, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Yu J, Lorenz A. Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project. Front Genet. 2020; 11:592769. PMID: 33763106.
      Citations:    
    7. Rangarajan H, Lynch JP. A Comparative Analysis of Quantitative Metrics of Root Architecture. Plant Phenomics. 2021; 2021:6953197. PMID: 33851135.
      Citations:    
    8. Lin PA, Chen Y, Chaverra-Rodriguez D, Heu CC, Zainuddin NB, Sidhu JS, Peiffer M, Tan CW, Helms A, Kim D, Ali J, Rasgon JL, Lynch J, Anderson CT, Felton GW. Silencing the alarm: an insect salivary enzyme closes plant stomata and inhibits volatile release. New Phytol. 2021 04; 230(2):793-803. PMID: 33459359.
      Citations:    Fields:    Translation:Animals
    9. Schneider HM, Strock CF, Hanlon MT, Vanhees DJ, Perkins AC, Ajmera IB, Sidhu JS, Mooney SJ, Brown KM, Lynch JP. Multiseriate cortical sclerenchyma enhance root penetration in compacted soils. Proc Natl Acad Sci U S A. 2021 02 09; 118(6). PMID: 33536333.
      Citations: 3     Fields:    Translation:Animals
    10. Rogers AR, Dunne JC, Romay C, Bohn M, Buckler ES, Ciampitti IA, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Hood E, Hooker DC, Knoll J, Lee EC, Lorenz A, Lynch JP, McKay J, Moose SP, Murray SC, Nelson R, Rocheford T, Schnable JC, Schnable PS, Sekhon R, Singh M, Smith M, Springer N, Thelen K, Thomison P, Thompson A, Tuinstra M, Wallace J, Wisser RJ, Xu W, Gilmour AR, Kaeppler SM, De Leon N, Holland JB. The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3 (Bethesda). 2021 02 09; 11(2). PMID: 33585867.
      Citations: 3     Fields:    Translation:Animals
    11. Pandey BK, Huang G, Bhosale R, Hartman S, Sturrock CJ, Jose L, Martin OC, Karady M, Voesenek LACJ, Ljung K, Lynch JP, Brown KM, Whalley WR, Mooney SJ, Zhang D, Bennett MJ. Plant roots sense soil compaction through restricted ethylene diffusion. Science. 2021 01 15; 371(6526):276-280. PMID: 33446554.
      Citations: 6     Fields:    Translation:Animals
    12. Levin KA, Tucker MR, Strock CF, Lynch JP, Mather DE. Three-dimensional imaging reveals that positions of cyst nematode feeding sites relative to xylem vessels differ between susceptible and resistant wheat. Plant Cell Rep. 2021 Feb; 40(2):393-403. PMID: 33388893.
      Citations:    Fields:    Translation:AnimalsCells
    13. Burridge JD, Black CK, Nord EA, Postma JA, Sidhu JS, York LM, Lynch JP. An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize (Zea mays) and Common Bean (Phaseolus vulgaris). Plant Phenomics. 2020; 2020:3252703. PMID: 33313549.
      Citations:    
    14. Strock CF, Burridge JD, Niemiec MD, Brown KM, Lynch JP. Root metaxylem and architecture phenotypes integrate to regulate water use under drought stress. Plant Cell Environ. 2021 01; 44(1):49-67. PMID: 32839986.
      Citations:    Fields:    Translation:Animals
    15. Schneider HM, Postma JA, Kochs J, Pflugfelder D, Lynch JP, van Dusschoten D. Spatio-Temporal Variation in Water Uptake in Seminal and Nodal Root Systems of Barley Plants Grown in Soil. Front Plant Sci. 2020; 11:1247. PMID: 32903494.
      Citations:    
    16. Strock CF, Lynch JP. Root secondary growth: an unexplored component of soil resource acquisition. Ann Bot. 2020 07 24; 126(2):205-218. PMID: 32588876.
      Citations: 2     Fields:    Translation:Animals
    17. Vanhees DJ, Loades KW, Bengough AG, Mooney SJ, Lynch JP. Root anatomical traits contribute to deeper rooting of maize under compacted field conditions. J Exp Bot. 2020 07 06; 71(14):4243-4257. PMID: 32420593.
      Citations: 4     Fields:    Translation:Animals
    18. Schneider HM, Klein SP, Hanlon MT, Nord EA, Kaeppler S, Brown KM, Warry A, Bhosale R, Lynch JP. Genetic control of root architectural plasticity in maize. J Exp Bot. 2020 05 30; 71(10):3185-3197. PMID: 32080722.
      Citations: 6     Fields:    Translation:Animals
    19. Schneider HM, Lynch JP. Should Root Plasticity Be a Crop Breeding Target? Front Plant Sci. 2020; 11:546. PMID: 32499798.
      Citations:    
    20. Klein SP, Schneider HM, Perkins AC, Brown KM, Lynch JP. Multiple Integrated Root Phenotypes Are Associated with Improved Drought Tolerance. Plant Physiol. 2020 07; 183(3):1011-1025. PMID: 32332090.
      Citations: 3     Fields:    Translation:Animals
    21. Benes B, Guan K, Lang M, Long SP, Lynch JP, Marshall-Colón A, Peng B, Schnable J, Sweetlove LJ, Turk MJ. Multiscale computational models can guide experimentation and targeted measurements for crop improvement. Plant J. 2020 07; 103(1):21-31. PMID: 32053236.
      Citations: 2     Fields:    Translation:Animals
    22. Schneider HM, Klein SP, Hanlon MT, Kaeppler S, Brown KM, Lynch JP. Genetic control of root anatomical plasticity in maize. Plant Genome. 2020 03; 13(1):e20003. PMID: 33016634.
      Citations: 4     Fields:    Translation:Animals
    23. McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hood E, Hooker D, Jarquin D, Kaeppler SM, Knoll J, Kruger G, Lauter N, Lee EC, Lima DC, Lorenz A, Lynch JP, McKay J, Miller ND, Moose SP, Murray SC, Nelson R, Poudyal C, Rocheford T, Rodriguez O, Romay MC, Schnable JC, Schnable PS, Scully B, Sekhon R, Silverstein K, Singh M, Smith M, Spalding EP, Springer N, Thelen K, Thomison P, Tuinstra M, Wallace J, Walls R, Wills D, Wisser RJ, Xu W, Yeh CT, de Leon N. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. BMC Res Notes. 2020 Feb 12; 13(1):71. PMID: 32051026.
      Citations: 6     Fields:    Translation:Animals
    24. Oyiga BC, Palczak J, Wojciechowski T, Lynch JP, Naz AA, Léon J, Ballvora A. Genetic components of root architecture and anatomy adjustments to water-deficit stress in spring barley. Plant Cell Environ. 2020 03; 43(3):692-711. PMID: 31734943.
      Citations: 3     Fields:    Translation:AnimalsCells
    25. Strock CF, Schneider HM, Galindo-Castañeda T, Hall BT, Van Gansbeke B, Mather DE, Roth MG, Chilvers MI, Guo X, Brown K, Lynch JP. Laser ablation tomography for visualization of root colonization by edaphic organisms. J Exp Bot. 2019 10 15; 70(19):5327-5342. PMID: 31199461.
      Citations: 9     Fields:    Translation:Animals
    26. Yang JT, Schneider HM, Brown KM, Lynch JP. Genotypic variation and nitrogen stress effects on root anatomy in maize are node specific. J Exp Bot. 2019 10 15; 70(19):5311-5325. PMID: 31231768.
      Citations: 13     Fields:    Translation:Animals
    27. Lynch JB, Schwartzman JA, Bennett BD, McAnulty SJ, Knop M, Nyholm SV, Ruby EG. Ambient pH Alters the Protein Content of Outer Membrane Vesicles, Driving Host Development in a Beneficial Symbiosis. J Bacteriol. 2019 10 15; 201(20). PMID: 31331976.
      Citations: 9     Fields:    Translation:AnimalsCells
    28. Galindo-Castañeda T, Brown KM, Kuldau GA, Roth GW, Wenner NG, Ray S, Schneider H, Lynch JP. Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize. Plant Cell Environ. 2019 11; 42(11):2999-3014. PMID: 31314912.
      Citations: 1     Fields:    Translation:AnimalsPHPublic Health
    29. Oladzad A, Porch T, Rosas JC, Moghaddam SM, Beaver J, Beebe SE, Burridge J, Jochua CN, Miguel MA, Miklas PN, Raatz B, White JW, Lynch J, McClean PE. Single and Multi-trait GWAS Identify Genetic Factors Associated with Production Traits in Common Bean Under Abiotic Stress Environments. G3 (Bethesda). 2019 06 05; 9(6):1881-1892. PMID: 31167806.
      Citations: 21     Fields:    Translation:Animals
    30. Lynch JP. Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture. . 2019 07; 223(2):548-564. PMID: 30746704.
      Citations:    
    31. Orman-Ligeza B, Morris EC, Parizot B, Lavigne T, Babé A, Ligeza A, Klein S, Sturrock C, Xuan W, Novák O, Ljung K, Fernandez MA, Rodriguez PL, Dodd IC, De Smet I, Chaumont F, Batoko H, Périlleux C, Lynch JP, Bennett MJ, Beeckman T, Draye X. The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water. Curr Biol. 2018 10 08; 28(19):3165-3173.e5. PMID: 30270188.
      Citations: 12     Fields:    Translation:AnimalsCells
    32. Jia X, Liu P, Lynch JP. Greater lateral root branching density in maize improves phosphorus acquisition from low phosphorus soil. J Exp Bot. 2018 09 14; 69(20):4961-4970. PMID: 30295904.
      Citations: 10     Fields:    Translation:Animals
    33. Rangarajan H, Postma JA, Lynch JP. Co-optimization of axial root phenotypes for nitrogen and phosphorus acquisition in common bean. Ann Bot. 2018 08 27; 122(3):485-499. PMID: 29982363.
      Citations: 13     Fields:    Translation:Animals
    34. AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, Graham C, Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. BMC Res Notes. 2018 Jul 09; 11(1):452. PMID: 29986751.
      Citations: 5     Fields:    Translation:Animals
    35. Schneider HM, Wojciechowski T, Postma JA, Brown KM, Lynch JP. Ethylene modulates root cortical senescence in barley. Ann Bot. 2018 06 28; 122(1):95-105. PMID: 29897390.
      Citations: 5     Fields:    Translation:AnimalsCells
    36. Lynch JP. Rightsizing root phenotypes for drought resistance. J Exp Bot. 2018 06 06; 69(13):3279-3292. PMID: 29471525.
      Citations: 27     Fields:    
    37. Galindo-Castañeda T, Brown KM, Lynch JP. Reduced root cortical burden improves growth and grain yield under low phosphorus availability in maize. Plant Cell Environ. 2018 07; 41(7):1579-1592. PMID: 29574982.
      Citations: 15     Fields:    Translation:Animals
    38. Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, Ljung K, Brown KM, Lynch JP, Dolan L, Vernoux T, Bishopp A, Wells D, von Wirén N, Bennett MJ, Swarup R. Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nat Commun. 2018 05 02; 9(1):1818. PMID: 29720582.
      Citations: 2     Fields:    
    39. Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ. Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nat Commun. 2018 05 01; 9(1):1810. PMID: 29717128.
      Citations:    Fields:    
    40. Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ. Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nat Commun. 2018 04 12; 9(1):1408. PMID: 29650967.
      Citations: 23     Fields:    Translation:Animals
    41. Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, Ljung K, Brown KM, Lynch JP, Dolan L, Vernoux T, Bishopp A, Wells D, von Wirén N, Bennett MJ, Swarup R. A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nat Commun. 2018 04 12; 9(1):1409. PMID: 29651114.
      Citations: 25     Fields:    Translation:Animals
    42. Sun B, Gao Y, Lynch JP. Large Crown Root Number Improves Topsoil Foraging and Phosphorus Acquisition. Plant Physiol. 2018 05; 177(1):90-104. PMID: 29618638.
      Citations: 12     Fields:    Translation:AnimalsCells
    43. Hanlon MT, Ray S, Saengwilai P, Luthe D, Lynch JP, Brown KM. Buffered delivery of phosphate to Arabidopsis alters responses to low phosphate. J Exp Bot. 2018 02 23; 69(5):1207-1219. PMID: 29304231.
      Citations: 4     Fields:    Translation:Animals
    44. Strock CF, Morrow de la Riva L, Lynch JP. Reduction in Root Secondary Growth as a Strategy for Phosphorus Acquisition. Plant Physiol. 2018 01; 176(1):691-703. PMID: 29118249.
      Citations: 17     Fields:    Translation:Animals
    45. Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N. The effect of artificial selection on phenotypic plasticity in maize. Nat Commun. 2017 11 07; 8(1):1348. PMID: 29116144.
      Citations: 19     Fields:    Translation:Animals
    46. Morris EC, Griffiths M, Golebiowska A, Mairhofer S, Burr-Hersey J, Goh T, von Wangenheim D, Atkinson B, Sturrock CJ, Lynch JP, Vissenberg K, Ritz K, Wells DM, Mooney SJ, Bennett MJ. Shaping 3D Root System Architecture. Curr Biol. 2017 Sep 11; 27(17):R919-R930. PMID: 28898665.
      Citations: 26     Fields:    Translation:Animals
    47. Lynch JB, Alegado RA. Spheres of Hope, Packets of Doom: the Good and Bad of Outer Membrane Vesicles in Interspecies and Ecological Dynamics. J Bacteriol. 2017 08 01; 199(15). PMID: 28416709.
      Citations: 18     Fields:    Translation:AnimalsCells
    48. Schneider HM, Postma JA, Wojciechowski T, Kuppe C, Lynch JP. Root Cortical Senescence Improves Growth under Suboptimal Availability of N, P, and K. Plant Physiol. 2017 Aug; 174(4):2333-2347. PMID: 28667049.
      Citations: 16     Fields:    Translation:Animals
    49. Postma JA, Kuppe C, Owen MR, Mellor N, Griffiths M, Bennett MJ, Lynch JP, Watt M. OpenSimRoot: widening the scope and application of root architectural models. . 2017 Aug; 215(3):1274-1286. PMID: 28653341.
      Citations:    
    50. Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, Klein LL, Leiboff S, Li M, Lynch JP, Maizel A, Maloof JN, Markelz RJC, Martinez CC, Miller LA, Mio W, Palubicki W, Poorter H, Pradal C, Price CA, Puttonen E, Reese JB, Rellán-Álvarez R, Spalding EP, Sparks EE, Topp CN, Williams JH, Chitwood DH. Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Front Plant Sci. 2017; 8:900. PMID: 28659934.
      Citations:    
    51. Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, Panneerselvam B, Price ND, Prusinkiewicz P, Raila D, Shekar RG, Shrivastava S, Shukla D, Srinivasan V, Stitt M, Turk MJ, Voit EO, Wang Y, Yin X, Zhu XG. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Front Plant Sci. 2017; 8:786. PMID: 28555150.
      Citations:    
    52. Schneider HM, Wojciechowski T, Postma JA, Brown KM, Lücke A, Zeisler V, Schreiber L, Lynch JP. Root cortical senescence decreases root respiration, nutrient content and radial water and nutrient transport in barley. Plant Cell Environ. 2017 Aug; 40(8):1392-1408. PMID: 28164319.
      Citations: 19     Fields:    Translation:Animals
    53. Burridge JD, Schneider HM, Huynh BL, Roberts PA, Bucksch A, Lynch JP. Genome-wide association mapping and agronomic impact of cowpea root architecture. Theor Appl Genet. 2017 Feb; 130(2):419-431. PMID: 27864597.
      Citations: 12     Fields:    Translation:Animals
    54. Aschtgen MS, Lynch JB, Koch E, Schwartzman J, McFall-Ngai M, Ruby E. Rotation of Vibrio fischeri Flagella Produces Outer Membrane Vesicles That Induce Host Development. J Bacteriol. 2016 08 15; 198(16):2156-65. PMID: 27246572.
      Citations: 21     Fields:    Translation:Cells
    55. Fernando DR, Marshall AT, Lynch JP. Foliar Nutrient Distribution Patterns in Sympatric Maple Species Reflect Contrasting Sensitivity to Excess Manganese. PLoS One. 2016; 11(7):e0157702. PMID: 27391424.
      Citations: 1     Fields:    Translation:Animals
    56. Gao Y, Lynch JP. Reduced crown root number improves water acquisition under water deficit stress in maize (Zea mays L.). J Exp Bot. 2016 08; 67(15):4545-57. PMID: 27401910.
      Citations: 38     Fields:    Translation:Animals
    57. Vejchasarn P, Lynch JP, Brown KM. Genetic Variability in Phosphorus Responses of Rice Root Phenotypes. Rice (N Y). 2016 Dec; 9(1):29. PMID: 27294384.
      Citations:    
    58. York LM, Silberbush M, Lynch JP. Spatiotemporal variation of nitrate uptake kinetics within the maize (Zea mays L.) root system is associated with greater nitrate uptake and interactions with architectural phenes. J Exp Bot. 2016 06; 67(12):3763-75. PMID: 27037741.
      Citations: 9     Fields:    Translation:Animals
    59. Zhu XG, Lynch JP, LeBauer DS, Millar AJ, Stitt M, Long SP. Plants in silico: why, why now and what?--an integrative platform for plant systems biology research. Plant Cell Environ. 2016 May; 39(5):1049-57. PMID: 26523481.
      Citations: 15     Fields:    Translation:Animals
    60. Das A, Schneider H, Burridge J, Ascanio AK, Wojciechowski T, Topp CN, Lynch JP, Weitz JS, Bucksch A. Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. Plant Methods. 2015; 11:51. PMID: 26535051.
      Citations:    
    61. Fernando DR, Lynch JP. Manganese phytotoxicity: new light on an old problem. Ann Bot. 2015 Sep; 116(3):313-9. PMID: 26311708.
      Citations: 17     Fields:    Translation:Animals
    62. Bishopp A, Lynch JP. The hidden half of crop yields. Nat Plants. 2015 Aug 04; 1:15117. PMID: 27250548.
      Citations: 24     Fields:    
    63. Zhan A, Schneider H, Lynch JP. Reduced Lateral Root Branching Density Improves Drought Tolerance in Maize. Plant Physiol. 2015 Aug; 168(4):1603-15. PMID: 26077764.
      Citations: 41     Fields:    Translation:Animals
    64. York LM, Lynch JP. Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition. J Exp Bot. 2015 Sep; 66(18):5493-505. PMID: 26041317.
      Citations: 20     Fields:    Translation:Animals
    65. Chimungu JG, Loades KW, Lynch JP. Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). J Exp Bot. 2015 Jun; 66(11):3151-62. PMID: 25903914.
      Citations: 28     Fields:    Translation:Animals
    66. York LM, Galindo-Castañeda T, Schussler JR, Lynch JP. Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress. J Exp Bot. 2015 Apr; 66(8):2347-58. PMID: 25795737.
      Citations: 30     Fields:    Translation:Animals
    67. Nord EA, Jaramillo RE, Lynch JP. Response to elevated CO2 in the temperate C3 grass Festuca arundinaceae across a wide range of soils. Front Plant Sci. 2015; 6:95. PMID: 25774160.
      Citations:    
    68. Zhan A, Lynch JP. Reduced frequency of lateral root branching improves N capture from low-N soils in maize. J Exp Bot. 2015 Apr; 66(7):2055-65. PMID: 25680794.
      Citations: 40     Fields:    Translation:AnimalsCells
    69. Lynch JP, Wojciechowski T. Opportunities and challenges in the subsoil: pathways to deeper rooted crops. J Exp Bot. 2015 Apr; 66(8):2199-210. PMID: 25582451.
      Citations: 57     Fields:    Translation:Animals
    70. Lynch JP. Root phenes that reduce the metabolic costs of soil exploration: opportunities for 21st century agriculture. Plant Cell Environ. 2015 Sep; 38(9):1775-84. PMID: 25255708.
      Citations: 54     Fields:    Translation:Animals
    71. Chimungu JG, Brown KM, Lynch JP. Reduced root cortical cell file number improves drought tolerance in maize. Plant Physiol. 2014 Dec; 166(4):1943-55. PMID: 25355868.
      Citations: 38     Fields:    Translation:Animals
    72. Burton AL, Johnson J, Foerster J, Hanlon MT, Kaeppler SM, Lynch JP, Brown KM. QTL mapping and phenotypic variation of root anatomical traits in maize (Zea mays L.). Theor Appl Genet. 2015 Jan; 128(1):93-106. PMID: 25326723.
      Citations: 11     Fields:    Translation:Animals
    73. Chimungu JG, Brown KM, Lynch JP. Large root cortical cell size improves drought tolerance in maize. Plant Physiol. 2014 Dec; 166(4):2166-78. PMID: 25293960.
      Citations: 34     Fields:    Translation:Animals
    74. Zhang C, Postma JA, York LM, Lynch JP. Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture. Ann Bot. 2014 Dec; 114(8):1719-33. PMID: 25274551.
      Citations: 15     Fields:    Translation:Animals
    75. Burton AL, Johnson JM, Foerster JM, Hirsch CN, Buell CR, Hanlon MT, Kaeppler SM, Brown KM, Lynch JP. QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.). Theor Appl Genet. 2014 Nov; 127(11):2293-311. PMID: 25230896.
      Citations: 27     Fields:    Translation:Animals
    76. Bucksch A, Burridge J, York LM, Das A, Nord E, Weitz JS, Lynch JP. Image-based high-throughput field phenotyping of crop roots. Plant Physiol. 2014 Oct; 166(2):470-86. PMID: 25187526.
      Citations: 49     Fields:    Translation:Animals
    77. Lynch JP, Chimungu JG, Brown KM. Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement. J Exp Bot. 2014 Nov; 65(21):6155-66. PMID: 24759880.
      Citations: 58     Fields:    Translation:Animals
    78. Hu B, Henry A, Brown KM, Lynch JP. Root cortical aerenchyma inhibits radial nutrient transport in maize (Zea mays). Ann Bot. 2014 Jan; 113(1):181-9. PMID: 24249807.
      Citations: 19     Fields:    Translation:Animals
    79. York LM, Nord EA, Lynch JP. Integration of root phenes for soil resource acquisition. Front Plant Sci. 2013; 4:355. PMID: 24062755.
      Citations:    
    80. Jaramillo RE, Nord EA, Chimungu JG, Brown KM, Lynch JP. Root cortical burden influences drought tolerance in maize. Ann Bot. 2013 Jul; 112(2):429-37. PMID: 23618897.
      Citations: 28     Fields:    Translation:Animals
    81. Weigt SS, Copeland CAF, Derhovanessian A, Shino MY, Davis WA, Snyder LD, Gregson AL, Saggar R, Lynch JP, Ross DJ, Ardehali A, Elashoff RM, Palmer SM, Belperio JA. Colonization with small conidia Aspergillus species is associated with bronchiolitis obliterans syndrome: a two-center validation study. Am J Transplant. 2013 Apr; 13(4):919-927. PMID: 23398785.
      Citations: 37     Fields:    Translation:HumansAnimalsCells
    82. Lynch JP. Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems. Ann Bot. 2013 Jul; 112(2):347-57. PMID: 23328767.
      Citations: 202     Fields:    Translation:Animals
    83. Lynch JP, Brown KM. New roots for agriculture: exploiting the root phenome. Philos Trans R Soc Lond B Biol Sci. 2012 Jun 05; 367(1595):1598-604. PMID: 22527403.
      Citations: 59     Fields:    Translation:Animals
    84. Postma JA, Lynch JP. Complementarity in root architecture for nutrient uptake in ancient maize/bean and maize/bean/squash polycultures. Ann Bot. 2012 Jul; 110(2):521-34. PMID: 22523423.
      Citations: 30     Fields:    Translation:Animals
    85. Henry A, Chopra S, Clark DG, Lynch JP. Responses to low phosphorus in high and low foliar anthocyanin coleus (Solenostemon scutellarioides) and maize (Zea mays). Funct Plant Biol. 2012 Apr; 39(3):255-265. PMID: 32480779.
      Citations: 1     Fields:    
    86. De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F, Draye X, Zhang H, Broadley MR, Péret B, Hammond JP, Fukaki H, Mooney S, Lynch JP, Nacry P, Schurr U, Laplaze L, Benfey P, Beeckman T, Bennett M. Analyzing lateral root development: how to move forward. Plant Cell. 2012 Jan; 24(1):15-20. PMID: 22227890.
      Citations: 45     Fields:    
    87. Nord EA, Zhang C, Lynch JP. Root responses to neighbouring plants in common bean are mediated by nutrient concentration rather than self/non-self recognition. Funct Plant Biol. 2011 Dec; 38(12):941-952. PMID: 32480953.
      Citations: 1     Fields:    
    88. Nord EA, Shea K, Lynch JP. Optimizing reproductive phenology in a two-resource world: a dynamic allocation model of plant growth predicts later reproduction in phosphorus-limited plants. Ann Bot. 2011 Aug; 108(2):391-404. PMID: 21712299.
      Citations: 8     Fields:    Translation:Animals
    89. Lynch JP. Root phenes for enhanced soil exploration and phosphorus acquisition: tools for future crops. Plant Physiol. 2011 Jul; 156(3):1041-9. PMID: 21610180.
      Citations: 181     Fields:    Translation:Animals
    90. Postma JA, Lynch JP. Theoretical evidence for the functional benefit of root cortical aerenchyma in soils with low phosphorus availability. Ann Bot. 2011 Apr; 107(5):829-41. PMID: 20971728.
      Citations: 44     Fields:    Translation:Animals
    91. Zhu J, Brown KM, Lynch JP. Root cortical aerenchyma improves the drought tolerance of maize (Zea mays L.). Plant Cell Environ. 2010 May; 33(5):740-9. PMID: 20519019.
      Citations: 65     Fields:    Translation:Animals
    92. Nord EA, Lynch JP. Plant phenology: a critical controller of soil resource acquisition. J Exp Bot. 2009; 60(7):1927-37. PMID: 19286918.
      Citations: 27     Fields:    Translation:Animals
    93. Kim HJ, Lynch JP, Brown KM. Ethylene insensitivity impedes a subset of responses to phosphorus deficiency in tomato and petunia. Plant Cell Environ. 2008 Dec; 31(12):1744-55. PMID: 18771572.
      Citations: 27     Fields:    Translation:AnimalsCells
    94. Nord EA, Lynch JP. Delayed reproduction in Arabidopsis thaliana improves fitness in soil with suboptimal phosphorus availability. Plant Cell Environ. 2008 Oct; 31(10):1432-41. PMID: 18643901.
      Citations: 13     Fields:    Translation:Animals
    95. Basu P, Pal A, Lynch JP, Brown KM. A novel image-analysis technique for kinematic study of growth and curvature. Plant Physiol. 2007 Oct; 145(2):305-16. PMID: 17720760.
      Citations: 26     Fields:    Translation:Animals
    96. Lynch JP. Not necessarily the first. Science. 2007 Jul 20; 317(5836):319. PMID: 17641182.
      Citations:    Fields:    
    97. Basu P, Zhang YJ, Lynch JP, Brown KM. Ethylene modulates genetic, positional, and nutritional regulation of root plagiogravitropism. Funct Plant Biol. 2007 Feb; 34(1):41-51. PMID: 32689330.
      Citations: 1     Fields:    
    98. Zhu J, Mickelson SM, Kaeppler SM, Lynch JP. Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels. Theor Appl Genet. 2006 Jun; 113(1):1-10. PMID: 16783587.
      Citations: 39     Fields:    Translation:AnimalsCells
    99. Liao H, Yan X, Rubio G, Beebe SE, Blair MW, Lynch JP. Corrigendum to: Genetic mapping of basal root gravitropism and phosphorus acquisition efficiency in common bean. Funct Plant Biol. 2006 Mar; 33(2):207. PMID: 32689227.
      Citations:    Fields:    
    100. Clair SB, Carlson JE, Lynch JP. Evidence for oxidative stress in sugar maple stands growing on acidic, nutrient imbalanced forest soils. Oecologia. 2005 Sep; 145(2):258-69. PMID: 15965756.
      Citations: 6     Fields:    Translation:AnimalsCells
    101. Ho MD, Rosas JC, Brown KM, Lynch JP. Root architectural tradeoffs for water and phosphorus acquisition. Funct Plant Biol. 2005 Sep; 32(8):737-748. PMID: 32689171.
      Citations: 7     Fields:    
    102. Zhu J, Kaeppler SM, Lynch JP. Topsoil foraging and phosphorus acquisition efficiency in maize (Zea mays). Funct Plant Biol. 2005 Sep; 32(8):749-762. PMID: 32689172.
      Citations: 5     Fields:    
    103. Zhu J, Kaeppler SM, Lynch JP. Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply. Theor Appl Genet. 2005 Aug; 111(4):688-95. PMID: 16021413.
      Citations: 49     Fields:    Translation:Animals
    104. St Clair SB, Lynch JP. Base cation stimulation of mycorrhization and photosynthesis of sugar maple on acid soils are coupled by foliar nutrient dynamics. . 2005 Feb; 165(2):581-90. PMID: 15720668.
      Citations:    
    105. St Clair SB, Lynch JP. Element accumulation patterns of deciduous and evergreen tree seedlings on acid soils: implications for sensitivity to manganese toxicity. Tree Physiol. 2005 Jan; 25(1):85-92. PMID: 15519989.
      Citations: 10     Fields:    Translation:Animals
    106. He Z, Ma Z, Brown KM, Lynch JP. Assessment of inequality of root hair density in Arabidopsis thaliana using the Gini coefficient: a close look at the effect of phosphorus and its interaction with ethylene. Ann Bot. 2005 Jan; 95(2):287-93. PMID: 15546931.
      Citations: 9     Fields:    Translation:Animals
    107. Zhu J, Lynch JP. The contribution of lateral rooting to phosphorus acquisition efficiency in maize (Zea mays) seedlings. Funct Plant Biol. 2004 Nov; 31(10):949-958. PMID: 32688963.
      Citations: 3     Fields:    
    108. Liao H, Yan X, Rubio G, Beebe SE, Blair MW, Lynch JP. Genetic mapping of basal root gravitropism and phosphorus acquisition efficiency in common bean. Funct Plant Biol. 2004 Nov; 31(10):959-970. PMID: 32688964.
      Citations: 4     Fields:    
    109. St Clair SB, Lynch JP. Photosynthetic and antioxidant enzyme responses of sugar maple and red maple seedlings to excess manganese in contrasting light environments. Funct Plant Biol. 2004 Nov; 31(10):1005-1014. PMID: 32688969.
      Citations: 3     Fields:    
    110. Rubio G, Sorgonà A, Lynch JP. Spatial mapping of phosphorus influx in bean root systems using digital autoradiography. J Exp Bot. 2004 Oct; 55(406):2269-80. PMID: 15333644.
      Citations: 4     Fields:    Translation:Animals
    111. Walk TC, Van Erp E, Lynch JP. Modelling applicability of fractal analysis to efficiency of soil exploration by roots. Ann Bot. 2004 Jul; 94(1):119-28. PMID: 15145791.
      Citations: 8     Fields:    Translation:Animals
    112. Tomscha JL, Trull MC, Deikman J, Lynch JP, Guiltinan MJ. Phosphatase under-producer mutants have altered phosphorus relations. Plant Physiol. 2004 May; 135(1):334-45. PMID: 15122033.
      Citations: 13     Fields:    Translation:Animals
    113. Ho MD, McCannon BC, Lynch JP. Optimization modeling of plant root architecture for water and phosphorus acquisition. J Theor Biol. 2004 Feb 07; 226(3):331-40. PMID: 14643647.
      Citations: 17     Fields:    Translation:Animals
    114. Miller CR, Ochoa I, Nielsen KL, Beck D, Lynch JP. Genetic variation for adventitious rooting in response to low phosphorus availability: potential utility for phosphorus acquisition from stratified soils. Funct Plant Biol. 2003 Oct; 30(9):973-985. PMID: 32689082.
      Citations: 4     Fields:    
    115. Halperin SJ, Lynch JP. Effects of salinity on cytosolic Na+ and K+ in root hairs of Arabidopsis thaliana: in vivo measurements using the fluorescent dyes SBFI and PBFI. J Exp Bot. 2003 Sep; 54(390):2035-43. PMID: 12925666.
      Citations: 16     Fields:    Translation:AnimalsCells
    116. Zhang YJ, Lynch JP, Brown KM. Ethylene and phosphorus availability have interacting yet distinct effects on root hair development. J Exp Bot. 2003 Oct; 54(391):2351-61. PMID: 12947049.
      Citations: 38     Fields:    Translation:AnimalsCells
    117. Fan M, Zhu J, Richards C, Brown KM, Lynch JP. Physiological roles for aerenchyma in phosphorus-stressed roots. Funct Plant Biol. 2003 Jul; 30(5):493-506. PMID: 32689034.
      Citations: 3     Fields:    
    118. Halperin SJ, Gilroy S, Lynch JP. Sodium chloride reduces growth and cytosolic calcium, but does not affect cytosolic pH, in root hairs of Arabidopsis thaliana L. J Exp Bot. 2003 Apr; 54(385):1269-80. PMID: 12654878.
      Citations: 11     Fields:    Translation:AnimalsCells
    119. Ma Z, Baskin TI, Brown KM, Lynch JP. Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness. Plant Physiol. 2003 Mar; 131(3):1381-90. PMID: 12644687.
      Citations: 69     Fields:    Translation:AnimalsCells
    120. Flaherty KR, Thwaite EL, Kazerooni EA, Gross BH, Toews GB, Colby TV, Travis WD, Mumford JA, Murray S, Flint A, Lynch JP, Martinez FJ. Radiological versus histological diagnosis in UIP and NSIP: survival implications. Thorax. 2003 Feb; 58(2):143-8. PMID: 12554898.
      Citations: 100     Fields:    Translation:Humans
    121. Rubio G, Zhu J, Lynch JP. A critical test of the two prevailing theories of plant response to nutrient availability. Am J Bot. 2003 Jan; 90(1):143-52. PMID: 21659090.
      Citations: 8     Fields:    
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